Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2341 ATGGTTACGTCGACGAGCTTCTTGTGCAGTAGAATCCCCGCAAAATTGGCTTCAAAACGGAGTTTGCATTTCCCTTGTAATGCCTCTAATGGGCCCTCTTCTTCACTTCGGTCCCTCAGTCTATTTAGTCGTAATAATGTCCACACCTTGTGCAGCTCATCACCTTCATTTGGCTTCCAACGAGTCATTCGAATCGGCCCCTACTGCAGCAACAATGAAACTAAGCTTTCCAACGGCTCCAAAAGCAGGACACAACGTCGATTTAAAGCAAGAACAAAGCTAACTAATCGTAACGAATCTAAGAAGGATGGGTCTTCCCAATATCCATCTCAGTCATCCTTGCCAGTGTTTCCGGCAGTGGACTTGAACTCCCAGATAGAAGAACAGGAGGAGGTCCCAGGCACTGAGAGGAGGAGAGAAACTAGCATTGAGGCACCGCTCAAGGTGAGTGGCATCTACCAGAATGGAGACCCGCTGGGGCGGAAGGATCTAGGGAAGAGCGTTATGCGATGGATTCGTCATAGTATGAGGGCCATGGCTTCCGATTTTGCTTCTGCAGAGGCACAGGGGGAGGTCTCGGAGCTGAGGCAGCGGATGGGACCAGGTCTCACCTTTGTAATTCAAGCTCAACCTTATCTGAATGCCGTTCCCATGCCTCTGGGCCTTGAAGTTATCTGCTTGAAAGCTTGCACCCATTATCCTACTCTGTTTGATCACTTTCAAAGGGAGCTGCGGGACGTTCTCCAAGACCTCCAGCGTAAATCATTGGTCCAGAACTGGTGTGAAACGGAATCATGGAAACTACTGAAAGATCTCGCCACATCAGCTCAGCATAGGGCAATTGCAAGAAAGGTAGCTCAGCCAAAGTCTGTCTCTGTCCAAGGTGTTTTAGGAATGGACTTAGAGAAGGCCAAGGCAATGCAGCACAGAATTGAGGGATTCACCAAGCACATGTCAGAATTACTCCGCATAGAAAGAGATGCCGAGTTGGAGTTTACCCAAGAAGAGTTGGATGCCGTTCCTAGACCAGATGATACTTCTGACTCCTTGAAGCCAATTGAGTTCTTGGTTAGCCATAGTCAGGCTCAACAAGAACTCTGTGACACTATATGTAATTTAAATGCCATCAGTACATCTACAGGATTGGGAGGAATGCATTTGGTGTTATTCAAGGTTGAAAGGAACCACCGGTTACCACCCACTACCCTTTCACCTGGAGACATGGTTTGTGTGAGAACATGTGATAACAGGGGTGCAGTCACAACCTCATGTCTGCAAGGCTTTGTTAACAGTCTTGGGGATGACGGCTGTAGTATAAGTGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTTTCTAAACTCTTTGGGAAGAGTGTACGTATTGACCGAATCCAAGGACTGGCTGATACTCTTACATATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAAAAGAATGGTTTACGAAAGAAGAATCCTTCTATTGCTGTTGTGGCGACTCTGTTTGGAGATGGGGAAGATTTTGCTTGGTTTGAGAAAAATCATATTGCTGACTGGGATGAAGAAAACATAAACGAACTGTTAGCAAGTGAAAGCTTTGATAATTCCCAGCAAAAAGCTATAGCACTAGGTTTGAATAAAAAAAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGGAAGACAGGTTTGCTCAAGCAACTTATAGCATATGCTGTTAAGCGAGGTGAAAGGGTTCTTGTAACAGCACCTACTAACGCAGCTGTTGATAACATGGTGGAAAAGCTTTCAAATATTGGATTAAATATTGTGCGGGTTGGCAATCCTGCTCGCATATCAAAAACTGTGGGTTCAAAGTCTTTAGGGGAAATTGTGAATGCTAAGCTTGCAGGTTTTCGAGCTGAGTATGAAAGGAAGAAGTCAGATCTAAGGAGAGATCTTAGACATTGCTTAAAAGATGATTCATTAGGAGCTGGCATACGCCAACTTTTGAAACAGTTGGGAAGGTCAATGAAGAGAAAGGAAAAGGAGACTACGAATGAGGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACAAATACTGGAGCAGCTGATCCATTGATTCGAAGGCTAGATGCTTTTGACTTGGTTGTTATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGTTGGATTCCTATATTGCAAGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTTTCTAGAAAGGCTTTGGAAGGAGGTCTTGGAATATCATTACTTGAGAGGGCTACAACTTTGCATGAAGGAGTTCTCACCACGAGGTTAACAATACAATACCGTATGAATGATGCAATTGCTAGTTGGGCATCAAAGGAGATGTATGGTGGATTATTGAAGTCCTCTGAGAATGTCTTTTCTCATCTTCTTGTAGACTCTTCTTTTGTCAAGCCTACATGGATAACACAATGTCCTCTGTTGTTGCTTGATACAAGAATGCCATATGGAAGTCTGTCAATTGGTTGTGAAGAGAATCTAGACCCAACTGGAACAGGTTCATTTTATAATGAAGGAGAAGCTGATATTGTTGTGCAGCACGTCTTTTCCTTAATTTATGCTGGTGTCAACCCAACAACTATTATGGTGCAATCTCCTTATGTTGCTCAAGTACAACTTTTGAGGGACATGTTGAATGAGCTTCCAGAGGCTATTGGTACTGAGGTTGCAACAATTGATAGCTTTCAAGGACAGGAAGCTGATGCAGTAATTATATCCATGGTACGTTCAAACGCTTTAGGTGCTGTTGGATTCCTAGGTGATAGCAGAAGAATCAATGTTGCCATTACTAGGGCACGCAAACATTTAGCAGTGATATGTGACAGCTCCACAATTTGCCATAATACCTTCTTAGCAAGACTACTACGTCACATCCGGCATTTCGGTAGGGTAAAACATGCAGAACCTGGTCGTTCTGGAGGTTCTGGGCTGGACATGAATCCAATGTTACCTTCCATTAATTAG 3027 0.4427 MVTSTSFLCSRIPAKLASKRSLHFPCNASNGPSSSLRSLSLFSRNNVHTLCSSSPSFGFQRVIRIGPYCSNNETKLSNGSKSRTQRRFKARTKLTNRNESKKDGSSQYPSQSSLPVFPAVDLNSQIEEQEEVPGTERRRETSIEAPLKVSGIYQNGDPLGRKDLGKSVMRWIRHSMRAMASDFASAEAQGEVSELRQRMGPGLTFVIQAQPYLNAVPMPLGLEVICLKACTHYPTLFDHFQRELRDVLQDLQRKSLVQNWCETESWKLLKDLATSAQHRAIARKVAQPKSVSVQGVLGMDLEKAKAMQHRIEGFTKHMSELLRIERDAELEFTQEELDAVPRPDDTSDSLKPIEFLVSHSQAQQELCDTICNLNAISTSTGLGGMHLVLFKVERNHRLPPTTLSPGDMVCVRTCDNRGAVTTSCLQGFVNSLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGDGEDFAWFEKNHIADWDEENINELLASESFDNSQQKAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIAYAVKRGERVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLAGFRAEYERKKSDLRRDLRHCLKDDSLGAGIRQLLKQLGRSMKRKEKETTNEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVIFSRKALEGGLGISLLERATTLHEGVLTTRLTIQYRMNDAIASWASKEMYGGLLKSSENVFSHLLVDSSFVKPTWITQCPLLLLDTRMPYGSLSIGCEENLDPTGTGSFYNEGEADIVVQHVFSLIYAGVNPTTIMVQSPYVAQVQLLRDMLNELPEAIGTEVATIDSFQGQEADAVIISMVRSNALGAVGFLGDSRRINVAITRARKHLAVICDSSTICHNTFLARLLRHIRHFGRVKHAEPGRSGGSGLDMNPMLPSIN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2341 1008 CDD SF1_C_Upf1 784 980 IPR047187 -
Acco08g2341 1008 SMART ultradead3 530 783 IPR014001 -
Acco08g2341 1008 MobiDBLite consensus disorder prediction 73 114 - -
Acco08g2341 1008 MobiDBLite consensus disorder prediction 988 1008 - -
Acco08g2341 1008 Coils Coil 1007 1008 - -
Acco08g2341 1008 Gene3D - 349 468 - -
Acco08g2341 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 971 IPR027417 -
Acco08g2341 1008 Gene3D - 318 766 IPR027417 -
Acco08g2341 1008 SMART AAA_5 549 764 IPR003593 GO:0016887
Acco08g2341 1008 FunFam DNA-binding protein SMUBP-2 isoform X2 337 468 - -
Acco08g2341 1008 Gene3D - 782 990 IPR027417 -
Acco08g2341 1008 Pfam AAA domain 534 751 IPR041677 GO:0004386
Acco08g2341 1008 Coils Coil 635 655 - -
Acco08g2341 1008 CDD DEXXQc_SMUBP2 533 783 - -
Acco08g2341 1008 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 179 991 - -
Acco08g2341 1008 Pfam AAA domain 760 963 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2341 Acco-ChrAcco08 39392929 39418164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2341 525 723 Core DNA Replication Machinery Family AT1G08840 27.363 6.75e-09 58.2