Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2336 ATGGGAGCTGTTAGCTTTGAAATTAGTAGAAATTCAGCTTTTGCTTTGCATTGTTATGGAAATTCGTTTTCTTCCGGGGTTACTATATCTTGGAGACCCTTTCTTGGTGCATCTTTGAACACGAGAAATGCAAGTAAAGGTCAAGTTTTTCATGCCCAAAAGCTCAATTACGAACCAGTTTGTGCTTCGTTGAAGAGTGGCTTCAAAGCTGGGTTGATAAATGATGGTCTGCTTTCAAATAAATTAGAGTTTAAGCCATCATTCGATGATTATTTGAAGGAAATGGAGTCCTCAAGAGAGAAGCGTGCTACCAGTACTGAAAAACAGAAGAGGGAAAAGGTTATGTCGAGGAAACCAAGGTTGGAAGGAGTTGAAAGAAGTACAAAATTTGGAAAGCTTGCAGGGCGCGTTGATAAAGCAAATGAATTGGGAATTGCTGAAACAGTCATGGCCAAAGAAAGCTCCTCCGTAGGTCATATTAAGCTCAGATCACGAGGAGCTAAAAGATTTGACCTTGAGTGTGATGGCGAAGAAAGCAAACTTGATATTACTATGAAGGAGAAAAAGGAGGGTGAGGTAATGGAAGACAAGTACCGGAATGATAGATCAAAACCTGATTCTGACAGAAATTTGATTAAAAGGGAACGTAGAAAGACAGGCAACAGCAAGGCTTCACTAAATTGGAATAGAAACCGTGGCAACACCATAGAGGTGGAAGTCGGCTATAAAGTACATACACTAAAGACGGCAGGAGGAAAGGATGTTACAACCAGTCAAATATACTGCAACTCAAAAGGGAAAATGCCTATCATAAACAAAACTGTTGTTAGCAACAATGTCGAGCATAATGGACTTGAGAACAGCTACACAAAAACTGAGAACGCGGGGAAAGAAAATGGACTGGAAAATCTCAACTTGATTGGAAGCAGTAGATGTTATGATTATGACAACTTGGAGATGGAAAGAGCAGCATTTAAGACTTTTGAAGAGTACAATGGTGTTGTCAACAAGCCACAAGTTTCACACAAGGAAGTGGAGGATAGAATCCAAAGGCTGGCAAATTCGCTGAATGGTGCTGATATAAATATTCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCAAAGATAAAATTTAACGATTATTCTATTGTGAGGGTTATCCAAAGATTGGGAAAACTAGGAAACTGGCAGCGGGTAATACAGGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCCATAAGCTAAGGCATATATACACTGCCGCTCTTGATGCACTTGGAAAGGCAAGAAGACCCATAGAGGCCCTAAATGTATTTCATGCCATGCTGCAACAAATTTCCACATATCCTGATTTGGTAGCCTACCATAGTATTGCTGTCACTCTTGGACAAGCAGGGCGCATGAAGGAACTCTTTGATGTAATTGATATTATGCAGTTGCCACCTATGAAGAAATTCAAAGTAGGAGCACTTGGGAACTGGGACCCTAGGCTGGAACCGGATGTCATAGTTTATAATGCTGTCCTCAATGCTTGTGTTCAGCAGAAACAGTGGGAAGGGGCTTTCTGGGTTTTACAGCAATTAAAGAAGCAACGTCAACAACCTTCTGCTACAACTTATGGCCTTGTCATGGAGGTGATGTTTACATGTGGCAAGTACAATCTAGTTCATGAATTTTTCATGAAAGTTCAGAAGTTTTCTACTCCCAATTCGTTGACATATAGAGTTCTTGTGAATACACTATGGAAAGAGGGCAAAACTGATGAGGCTATATTGGCCGTCCAAGATATGGAAAGACGTGGAATTGTAGGCTCTGCTTCTCTTTATTATGACCTTGCTCGATGTCTTTGTGCAGCTGGAAGATGTAGTGAGGCACTGAAGCAGATAGAGAAGATATGTAAGGTTGCAAACAAGCCACTTGTAGTGACCTACACGGGCTTAATTCAAGCATGTCTGGAATCTGGAAACATCCAAGATGGGGCATACATTTTTGGAAAAATGAAGGATATTTGCTCCCCAAATCTTGTTACCTGTAACATGATGCTTAAATCTTACCTGGAACATGGGATGTTTGAGGAAGGAAAAGAATTGTTTGAGATGATGTCAGAAAACACAAATCATGTGAAGAGAGATTCTGATTACAAAATTGTGGTGATACCGGATATTTACACATTCAACACCATGTTAGATGCATGTATAGTAGAGAAGAGATGGAATTACTTTAACTACGTCTACCAAAAGATGCTAGATCATGGATACCGCTTCAATCCAAAACGTCATCTTCGAATGATACTGGAGGCATCAAGAGCTGGAAAGGAAGAGCCTGTTGAAACGACGTGGAAGCACTTGATCCAAACAGATCGCAGTATTCCAGCTACTCTGATAAAGGAAAGATTATGTATGAAGCTTGAAAAGGATGATCATGTTGAAGCTCTTGGATGTATCACAAATGGTCTCTCCAAAGACTTGCAGGCATTTTCTAAGCTGTCTTGGTTGAATCTATTGAAAGAAAATGCCCAACGCTTTCAGAAGGATACACTAGTTAGGCTAATGGATGATGTAAACACCCTAGTTTCCAAAAGTAGCTTGCCACTTCCAGCACTTGAAACACTTGAAAAGCTGATGCTATCTTTGAAAGAATTTTGTTCCCCCGACCTTAGTATGACTGACATCAAACAGTTGGTTAGCTCTAGATGA 2706 0.4035 MGAVSFEISRNSAFALHCYGNSFSSGVTISWRPFLGASLNTRNASKGQVFHAQKLNYEPVCASLKSGFKAGLINDGLLSNKLEFKPSFDDYLKEMESSREKRATSTEKQKREKVMSRKPRLEGVERSTKFGKLAGRVDKANELGIAETVMAKESSSVGHIKLRSRGAKRFDLECDGEESKLDITMKEKKEGEVMEDKYRNDRSKPDSDRNLIKRERRKTGNSKASLNWNRNRGNTIEVEVGYKVHTLKTAGGKDVTTSQIYCNSKGKMPIINKTVVSNNVEHNGLENSYTKTENAGKENGLENLNLIGSSRCYDYDNLEMERAAFKTFEEYNGVVNKPQVSHKEVEDRIQRLANSLNGADINIPEWIFSKMMRSAKIKFNDYSIVRVIQRLGKLGNWQRVIQVIEWLQRRERFKSHKLRHIYTAALDALGKARRPIEALNVFHAMLQQISTYPDLVAYHSIAVTLGQAGRMKELFDVIDIMQLPPMKKFKVGALGNWDPRLEPDVIVYNAVLNACVQQKQWEGAFWVLQQLKKQRQQPSATTYGLVMEVMFTCGKYNLVHEFFMKVQKFSTPNSLTYRVLVNTLWKEGKTDEAILAVQDMERRGIVGSASLYYDLARCLCAAGRCSEALKQIEKICKVANKPLVVTYTGLIQACLESGNIQDGAYIFGKMKDICSPNLVTCNMMLKSYLEHGMFEEGKELFEMMSENTNHVKRDSDYKIVVIPDIYTFNTMLDACIVEKRWNYFNYVYQKMLDHGYRFNPKRHLRMILEASRAGKEEPVETTWKHLIQTDRSIPATLIKERLCMKLEKDDHVEALGCITNGLSKDLQAFSKLSWLNLLKENAQRFQKDTLVRLMDDVNTLVSKSSLPLPALETLEKLMLSLKEFCSPDLSMTDIKQLVSSR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2336 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 724 758 IPR002885 -
Acco08g2336 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Acco08g2336 901 MobiDBLite consensus disorder prediction 187 221 - -
Acco08g2336 901 Pfam PPR repeat family 503 547 IPR002885 -
Acco08g2336 901 Coils Coil 342 362 - -
Acco08g2336 901 NCBIfam pentatricopeptide repeat 645 671 IPR002885 -
Acco08g2336 901 NCBIfam pentatricopeptide repeat 679 707 IPR002885 -
Acco08g2336 901 NCBIfam pentatricopeptide repeat 726 757 IPR002885 -
Acco08g2336 901 MobiDBLite consensus disorder prediction 95 121 - -
Acco08g2336 901 Gene3D Tetratricopeptide repeat domain 634 816 IPR011990 GO:0005515
Acco08g2336 901 Pfam PPR repeat 421 447 IPR002885 -
Acco08g2336 901 Pfam PPR repeat 576 605 IPR002885 -
Acco08g2336 901 PANTHER OS01G0674700 PROTEIN 21 888 IPR044645 GO:0009658
Acco08g2336 901 Gene3D Tetratricopeptide repeat domain 410 568 IPR011990 GO:0005515
Acco08g2336 901 Gene3D Tetratricopeptide repeat domain 569 633 IPR011990 GO:0005515
Acco08g2336 901 MobiDBLite consensus disorder prediction 187 228 - -
Acco08g2336 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 707 IPR002885 -
Acco08g2336 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Acco08g2336 901 FunFam Pentatricopeptide repeat-containing protein 347 493 - -
Acco08g2336 901 Pfam Pentatricopeptide repeat domain 643 688 IPR002885 -
Acco08g2336 901 SUPERFAMILY TPR-like 507 704 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2336 Acco-ChrAcco08 39328452 39344976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2336 387 755 Glycosyltransferase AT1G05670 22.193 2.59e-17 85.1