Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2323 ATGACTTGTTTTCCTGTATTATTTGGTAGAAGGTTGCGTTCTTCAGCAAGGCTAGATCCGGACATTGAAGAAGAGTTTTCCGGTCTTCAGCATGTCAGACTTTATACATACAAAGAACTACGAACTGCCACTGAAGATTTTAGTCCTGTTAATAAAATTGGAGAAGGTGGTTTTGGTTCTGTTTACAAGGGACAATTAAAAGGTGGAAAAGTTGCTGCTATTAAAGTCCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATCTCAGAAATAGAGCATGAAAATTTAGTTAAGCTTTATGGCTGTTGTGTTGAAGGAAATAACAGAATATTGGTCTACAATTACCTTGAAAACAACAGCCTCGCACAAAACCTTATAGGTAGACGACGTAGCAGTATCCAATTCAATTGGCGAACAAGGTCTAAAATATGCATTGGGGTTGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCGCATATTGTTCATAGGGACATAAAAGCAAGTAACATTCTTCTTGACAAAGACCTCACACCCAAGATTTCAGATTTTGGGCTTGCAAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGCGTCGCAGGAACTATAGGTTACCTGGCACCAGAGTATGCAATAGGAGGCAAGCTAACACGAAAAGCTGATATATACAGCTTTGGAGTCCTCCTTGTGGAGATTGTAAGTGGTAGATGTAACACAAATACACAATTACCAATTGAAGAACAATACATTCTAGAAAGGACATGGAATCTTTACGAGCGGAAGGAATTGGTAGAACTGGTGGATGAATCGCTGAATGGGGAGTTTGATGCTGAGGAAGCTTGCAGATTTCTCAAGATTGGCCTTCTTTGCACCCAGGATGATGCCAAGATACGGCCATCCATGTCCTCCGTGGTTTACATGCTCACCGGCAGAATGCGTGTCGACGAGAGGAACATAGCAAAACCAGCCTTGATCTCTGATTTTATGGACCTCAAAGTGAGGAAAAAACCAGTCAGTAGTATAGACATGCACACTAAAGCTTCTTCATCCTCCGCCTCTTACAACCAGGATACTACTTTTTCATCAACCGTTTCAACCGCTGCAACTGCAACCTTCACTGCACGATATGATCAAAGCATGTAG 1173 0.4203 MTCFPVLFGRRLRSSARLDPDIEEEFSGLQHVRLYTYKELRTATEDFSPVNKIGEGGFGSVYKGQLKGGKVAAIKVLSAESRQGVREFLTEIKVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLAQNLIGRRRSSIQFNWRTRSKICIGVARGIAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGRCNTNTQLPIEEQYILERTWNLYERKELVELVDESLNGEFDAEEACRFLKIGLLCTQDDAKIRPSMSSVVYMLTGRMRVDERNIAKPALISDFMDLKVRKKPVSSIDMHTKASSSSASYNQDTTFSSTVSTAATATFTARYDQSM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2323 390 SMART serkin_6 47 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2323 390 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Acco08g2323 390 FunFam cold-responsive protein kinase 1 18 122 - -
Acco08g2323 390 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Acco08g2323 390 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Acco08g2323 390 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2323 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Acco08g2323 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 361 - -
Acco08g2323 390 Pfam Protein tyrosine and serine/threonine kinase 51 316 IPR001245 GO:0004672|GO:0006468
Acco08g2323 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Acco08g2323 390 FunFam cold-responsive protein kinase 1 123 334 - -
Acco08g2323 390 CDD STKc_IRAK 53 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2323 Acco-ChrAcco08 39163414 39167262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2323 21 383 Receptor kinase-like Gene Family AT1G53430 50.000 1.01e-113 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco08g2323 PK_Tyr_Ser-Thr 5.1e-47 CL0016