Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2298 ATGTCGTCGTCTTCACCAGTCATGGCTTTTGCAATTGCTTTTGCTGTTTGTGTGTTCTTCAGCTGCCTGCAGGTTTCTGTATCACAAGCTCAAAACGCTACAACAGATCCTTCTGAAGCGAGAGCTTTAAATTCAATCTTCAACAAATGGGGAAAATCGGCACTAGCAAATATATGGAATATAAGCGGGGAACCATGTAGCGGTCGAGCCATTGACAGCACTACAAAGGTCGACGACCTTAATCCATTTATCAAATGCGAGTGTTCCAATGGCACTTGCCACATTACTGGACTGAGGGTTTATGCATTGGATGTTGTTGGGGAAATCCCAGAAGAGCTATGGACTCTGACTCACCTTACCAATTTGAAACTCGACCAGAATTACTTGACGGGTTCTCTACCTCCAGCAATAGGAAATCTAACTCGCATGCAGTACTTGGCCTTAGGCATCAATTCTTTCTCAGGGGAGCTTCCCAGGGAATTGGGAAATCTGACCGAGTTGATAGTATTGGGTCTTGGATCCAACAGCTTTTCTGGTGCTATCCCATCTGAATTAGGGAAACTCGTGAAATTGGAACAACTCTACTTAGATAGTTCGGGACTTAGTGGCCAGATTCCTCCCACTTTTGCAAATCTTAAAAACCTGGCTACAGTATGGGCTTCAGACATGGAACTCACGGGCAGGATACCTGACTTCATAGGAAATTGGTCTAAGCTTAAGTCGTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAATACCATCATCATTGAGCAATCTGACTTCTATGTCAGAGTTGAGAATAAGTGAAATATCTAATGCGAGCTCCTCACTAGAATTTATAAGGAATATGAAGTCTTTGACTGTCTTCCTTGCTGCCCTTGAAATCAGAGGTGGAATTTCAAGGGATCCATGGCTGATGATTATATATGCTGGTTCTTGCAGGGATCTGAGCTTCAATAACATCACAGGACAGATTCCGGGATCACTTTTCAATCTGAGTTCACTGACATACTTGTTTCTTGGAAATAACAAACTCAGTGGTGCAATCCCTACTCAGATAAGCCCAACTCTTCTCAATATAAATTTGGTTGCCAACAACTTGACAATAGATGGTTCAACTAGCAGTGGCCTTCCTTCTGGACTCAATTGTTTGCAGCAAAATTTTCCTTGTTTTCGTGGTGATGGAATATATTATAACTTTGCAATCAAGTGTGGCGGTCCTCCAATTACAACAGCAGAAAGAATTACTTATGACACAGATAATGAGACGCTTGGTCCTGCAACTTATTTTGTTACTGATACAAGAAGATGGGCAGTTAGCAATGTTGGGTTATTTACTGGGTCAAACAATCCTCTATACATAAGTTCTGTATCCAATCAGTTCACTGGTACTGTGGACTCAGAGCTCTTCCAGACAGCACGGCTATCGGCATCTTCATTAAGATATTATGGCCTGGGGCTGGAAAATGGGAATTATAACATTTCCCTCTTTTTCGCAGAAACATCTATTCTAGATACTACTACGTGGAGAAGTCTTGGCAAACGGGTCTTTGATATATATATCCAGGGGAATCGTGTTTGGAAGGATTTTGACATAAAAAGGGAAGCTGGGGGTGCCTCTTTTAGAGCTGTCCGAAGGGATTTTCCGGTTACTGTGTCAGAAAACTTTCTTGAGATCCATCTCTTTTGGGCCGGAAAAGGGACTTGCTGTATTCCACTTCAAGGTACATATGGTCCTCTGATCTCAGCAATCAGCGCTACCCCAGATTTCATTCCCAAAGTCAGTAACAAACTTCCAGGCAGTTCAAAGAACAGAACCGGTTTGATTGTGGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTGTCTATTGTGGTTTTCTGTATCGTCCAGAGAAGAAAGCATCATGGAGATGGTGAAGAAGAGCTTTTAGGTATTGATATAAAGACATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAGGTGACTTCAATCCTGACAACAAACTGGGGGAGGGAGGTTTTGGACCTGTTTATAAGGGAACACTTAATGATGGAAGAGTAGTTGCTGTGAAACAATTATCTGTAGGATCTCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCAACAATATCTGCTGTGCAACATCGCAATCTTGTTAAATTATACGGATGTTGCCTTGAAGGAAATAAAAGACATCTTGTCTATGAGTATCTAGAAAACAAGAGTCTTGATAAAGCATTATTTGAAAATTGTTTAGCTCTCAACTGGCCAACACGCTATGATATCTGCATGGGTGTGGCTAGAGGTTTAGCTTATCTTCATGAAGAGTCTCGGCTCCGTATTGTGCACCGTGATGTAAAGGCTAGTAATATTCTTCTTGATTATGAGCTTACCCCTAAAATATCTGATTTTGGTTTGGCCAAGTTATACGATGATAAAAAGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATACCTTGCTCCGGAGTATGCCATGCGTGGCCACCTGACAGAGAAAGCAGATGTGTTTTCCTTTGGCGTTTTGGCCTTAGAGATGGTTAGTGGGAGGCCAAATTCTGATTCAGGCCTAGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTGCATGAAAACAACTCTATACTTGAACTGGTAGATCCTAGACTATCAAAGGGTTTCAACGAGGAAGAAGTAAAAAGGATTGTAGGGATAAGTCTTCTGTGCACTCAATCATCCCCATCATTAAGGCCGGCGATGTCCCGTGTGGTGGCCATGCTTTCTGGAGATATCGAAGTGAGCAGTGTAACTTCAAAACCTGGATACTTGACAGACTGGAAATTTGATGATGTGAGCAGCTTCATGACTGGCTTGGCCACAAGGGGATCAGAGACAAGTCAATATAACTCATCAGCAAGTACCAGCACTGTTAGTGTTGCAAACAATTCACCTGGAGATGCTTCTAAACCAATCCTTCGTCATATTATTAGTGAAGGTAGGTGA 3024 0.4229 MSSSSPVMAFAIAFAVCVFFSCLQVSVSQAQNATTDPSEARALNSIFNKWGKSALANIWNISGEPCSGRAIDSTTKVDDLNPFIKCECSNGTCHITGLRVYALDVVGEIPEELWTLTHLTNLKLDQNYLTGSLPPAIGNLTRMQYLALGINSFSGELPRELGNLTELIVLGLGSNSFSGAIPSELGKLVKLEQLYLDSSGLSGQIPPTFANLKNLATVWASDMELTGRIPDFIGNWSKLKSLRFQGNSFEGPIPSSLSNLTSMSELRISEISNASSSLEFIRNMKSLTVFLAALEIRGGISRDPWLMIIYAGSCRDLSFNNITGQIPGSLFNLSSLTYLFLGNNKLSGAIPTQISPTLLNINLVANNLTIDGSTSSGLPSGLNCLQQNFPCFRGDGIYYNFAIKCGGPPITTAERITYDTDNETLGPATYFVTDTRRWAVSNVGLFTGSNNPLYISSVSNQFTGTVDSELFQTARLSASSLRYYGLGLENGNYNISLFFAETSILDTTTWRSLGKRVFDIYIQGNRVWKDFDIKREAGGASFRAVRRDFPVTVSENFLEIHLFWAGKGTCCIPLQGTYGPLISAISATPDFIPKVSNKLPGSSKNRTGLIVGIVVGVGVVSFLSIVVFCIVQRRKHHGDGEEELLGIDIKTYTFSYSELKNATGDFNPDNKLGEGGFGPVYKGTLNDGRVVAVKQLSVGSHQGKSQFIAEIATISAVQHRNLVKLYGCCLEGNKRHLVYEYLENKSLDKALFENCLALNWPTRYDICMGVARGLAYLHEESRLRIVHRDVKASNILLDYELTPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVLALEMVSGRPNSDSGLEGEKMYLLEWAWQLHENNSILELVDPRLSKGFNEEEVKRIVGISLLCTQSSPSLRPAMSRVVAMLSGDIEVSSVTSKPGYLTDWKFDDVSSFMTGLATRGSETSQYNSSASTSTVSVANNSPGDASKPILRHIISEGR 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2298 1007 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 946 - -
Acco08g2298 1007 Gene3D Phosphorylase Kinase; domain 1 628 741 - -
Acco08g2298 1007 SMART serkin_6 666 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2298 1007 SUPERFAMILY L domain-like 79 289 - -
Acco08g2298 1007 CDD STKc_IRAK 672 934 - -
Acco08g2298 1007 SUPERFAMILY Protein kinase-like (PK-like) 649 955 IPR011009 -
Acco08g2298 1007 Gene3D Transferase(Phosphotransferase) domain 1 742 946 - -
Acco08g2298 1007 SUPERFAMILY L domain-like 316 382 - -
Acco08g2298 1007 Gene3D - 399 589 - -
Acco08g2298 1007 FunFam Leucine-rich repeat receptor-like protein kinase 398 589 - -
Acco08g2298 1007 Pfam Malectin domain 400 585 IPR021720 -
Acco08g2298 1007 Pfam Protein tyrosine and serine/threonine kinase 669 934 IPR001245 GO:0004672|GO:0006468
Acco08g2298 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Acco08g2298 1007 FunFam Leucine-rich repeat receptor-like protein kinase 635 741 - -
Acco08g2298 1007 MobiDBLite consensus disorder prediction 971 992 - -
Acco08g2298 1007 ProSiteProfiles Protein kinase domain profile. 666 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2298 1007 Gene3D Ribonuclease Inhibitor 36 302 IPR032675 -
Acco08g2298 1007 Gene3D Ribonuclease Inhibitor 313 388 IPR032675 -
Acco08g2298 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 965 - -
Acco08g2298 1007 FunFam Os05g0263100 protein 40 273 - -
Acco08g2298 1007 MobiDBLite consensus disorder prediction 971 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2298 Acco-ChrAcco08 38843768 38855686 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2298 100 273 Receptor kinase-like Gene Family AT1G56120 28.161 2.59e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco08g2298 PK_Tyr_Ser-Thr 2.8e-47 CL0016