Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2282 ATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACGAAAGTGAAGAGAGGACCATGGAGTCCTGAAGAAGACCTTAAGCTCATTACCTTCATCCACAAACATGGCCATGATAACTGGAGAGCTCTTCCTAAACTTGCAGGATTGGTGAGATGTGGGAAAAGCTGTCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTCTCTAAGGAAGAGGAGGACACCATCATAAGGCTTCACCATGCCTTTGGAAATAAGTGGTCAAAGATTGCATCTCATTTGCCAGGAAGGACAGACAATGAGATCAAGAACGTTTGGAACACACATCTCAAGAAAATATTAAAGCCTAAGCCCTCATTATCCATCACTACTACTACTACTACTACTAATACTCTGTCCTCTGCTTCATCTTCTTCCTCTGAAAAAATGGAGCAAGACTCAGCAGAGAAACAAGTTCCCAATGAAGCTATTAACAATGGCGTCGTCAAAGAGGACTCAAAAGAGTCACCAGCTTCAGAATCTTCCTCTGATCATTCATCATCAAAACAAGAGGAAGAAGATGAACAGATGTTAGAGTCCTTGCTTAAAGAAGATGAAGATCCTCTGCTCCAAATTCCAATGGATTCATTGGACTATGACATTTGGAACATTCTGGAGAATCCAGAATCCTTCCAGTCAAATGATTTTAAGGTCCCAAGTGCTTCTGAAGATAATGCAGACAAGAACAATTGGTTCAGTGAGTTAGAGAATGAACTTGGATTGGGAACTTCAGAGGGATTCAACCTAGCAAGCAATGATGCTGAGATGGATTTTCTGGAATCATCATGGTCCTCTTGGCCAGAAATTTTCAATCTTTAA 870 0.4149 MGKGRAPCCDKTKVKRGPWSPEEDLKLITFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIIRLHHAFGNKWSKIASHLPGRTDNEIKNVWNTHLKKILKPKPSLSITTTTTTTNTLSSASSSSSEKMEQDSAEKQVPNEAINNGVVKEDSKESPASESSSDHSSSKQEEEDEQMLESLLKEDEDPLLQIPMDSLDYDIWNILENPESFQSNDFKVPSASEDNADKNNWFSELENELGLGTSEGFNLASNDAEMDFLESSWSSWPEIFNL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2282 289 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Acco08g2282 289 MobiDBLite consensus disorder prediction 125 195 - -
Acco08g2282 289 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Acco08g2282 289 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Acco08g2282 289 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Acco08g2282 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Acco08g2282 289 SMART sant 15 65 IPR001005 -
Acco08g2282 289 SMART sant 68 116 IPR001005 -
Acco08g2282 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Acco08g2282 289 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Acco08g2282 289 FunFam Transcription factor RAX3 9 69 - -
Acco08g2282 289 MobiDBLite consensus disorder prediction 125 146 - -
Acco08g2282 289 MobiDBLite consensus disorder prediction 170 195 - -
Acco08g2282 289 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 230 - -
Acco08g2282 289 CDD SANT 71 114 IPR001005 -
Acco08g2282 289 CDD SANT 18 63 IPR001005 -
Acco08g2282 289 Gene3D - 15 68 - -
Acco08g2282 289 Gene3D - 71 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2282 Acco-ChrAcco08 38438199 38441304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2282 1 120 MYB Transcription Factor Family AT1G56160 85.833 1.60e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g2282 Myb_DNA-binding 4.2e-15 CL0123