Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2189 ATGCATGGTGTTGCAATTGAACAACCAGCGTCCCGGTCTTCAGCAAGTGTCGTTCGGCCACTTCGTCGTTCTCCACCAGTCTCTCCGGGAGAACCTCCACTTCATTCCGTCGTTACCCACCGTTCTCCTCGAAAGCTTCGGCGCATATCGTTTTACCCAGTTCTCTATGCCCAATGCTTTGATTTTGGGCCTACATTTGAGTTGAAAGTAATTGCTTCACGTGGGATTTTCCTTTTTAAGGCTTTTGGAAGTCATATTGTTGTTCTCCTACTAATAGAAGCAAGACGTGTCCATTGTTTAAGTCACATAGAGCCTCAACATGGTCCCCTTACTCCCTTAAGCATCGGTTTGAATAATGAGAATGAAACTAGGCCGAATAACAAAGTCAATAAACTGAAGCAGTTGGGTTCCTCCTCTTTAGCCTCAAAGAGCAGAGCAAAGACCATTGGTATCAACAAAAATAAAGCAGTTGGAGTCACAAAGAAGCAGCAGATAGAATCTGCTCCGTTTGCTGCCAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTGTTGATTGAGAGATTGGAAAATGAAGGTTTTACGGTTCCTACTGAAGTGCAGTCTGCAGCAATTCCTACAATTTTGAATAATCATGATGCAATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCATATCTTCTTCCCATTCTATCTAATGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTGATGGTGAGTCTGGTAAGAAAATGGGAATAGAGGCTGTTGTTGTTGCTCCCTCTAGGGAGTTAGGCATGCAGATAGTGAGGGAGTTCGAAAAGATACTTGGACTTGCTAACAAAAAGGCAGTTCAACAGCTGGTGGGAGGCGCAAATAGATCCAGGCAAGAAGAAGCCCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTCAGTGCTGCTGGGAAACTTCACACCCATGGCTGTCGTTATTTGATCCTAGACGAAGTTGATGAACTCCTGTCATTTAACTTCCGGGAAGACATGCACCGGATACTAGAACACGTGGGGAGAAGATCAGGAGCTGACCCACGAGCACAAAATGGTACAGCTCCTCGACGGGTTGAGCGTCAAACAATTATGGTATCTGCAACTGTTCCGTTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCGAATGACCCACTTCTTGTCCAAGCCAATAAAGTCGGCCTGCTTGAAACCATTTCACCTCCGACGCCTGTCAATTTATCTGGATCTGCTCCTAGCTCAAAATCTAACTCTACTACCCCTACACAGGCAGCAGAGAGTCTACCTCCTGCATTAAAGCATTATTATTGTGTCACAAAGTTACAGCATAAAGTTGATACCTTGAGAAGGTGTATTCACGCACTAGATGCCAAATATGTTATAGCTTTCATGAACCATATTAAGCAACTTAAGGATGTCGTCTTCAAGCTCGAGGCACGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAACTTGCCAGGTCAACAACTCTGAAGAAGTTCAAGAATGGTGAGGTGAGAGTCCTTGTGACCAATGAATTATCAGCACGGGGATTGGATGTGGCAGAATGCGATCTTGTGGTTAATTTGGACTTACCCACAGACTCCATTCACTATGCGCACCGAGCCGGCAGGACTGGGCGGCTTGGGAGGTCTGGTACAGTGCTTTCAATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGATACCAATATCATGCTGTGATTTTGTGGAGGGAAAGCTACTTCTTAAAGAAGAAGAGAAAATGCTAAATGCTGTGAGATGA 1872 0.4498 MHGVAIEQPASRSSASVVRPLRRSPPVSPGEPPLHSVVTHRSPRKLRRISFYPVLYAQCFDFGPTFELKVIASRGIFLFKAFGSHIVVLLLIEARRVHCLSHIEPQHGPLTPLSIGLNNENETRPNNKVNKLKQLGSSSLASKSRAKTIGINKNKAVGVTKKQQIESAPFAAKSFSELGLPHLLIERLENEGFTVPTEVQSAAIPTILNNHDAIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSDGESGKKMGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLILDEVDELLSFNFREDMHRILEHVGRRSGADPRAQNGTAPRRVERQTIMVSATVPFSVVRAARSWANDPLLVQANKVGLLETISPPTPVNLSGSAPSSKSNSTTPTQAAESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKYVIAFMNHIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVKKLQKQLGIPISCCDFVEGKLLLKEEEKMLNAVR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2189 623 CDD DEADc 184 409 - -
Acco08g2189 623 Gene3D - 449 605 IPR027417 -
Acco08g2189 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 408 IPR014001 -
Acco08g2189 623 CDD SF2_C_DEAD 452 581 - -
Acco08g2189 623 Pfam Helicase conserved C-terminal domain 466 572 IPR001650 -
Acco08g2189 623 MobiDBLite consensus disorder prediction 1 39 - -
Acco08g2189 623 MobiDBLite consensus disorder prediction 424 445 - -
Acco08g2189 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 467 611 IPR001650 -
Acco08g2189 623 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 142 610 - -
Acco08g2189 623 Pfam DEAD/DEAH box helicase 197 394 IPR011545 GO:0003676|GO:0005524
Acco08g2189 623 Gene3D - 134 411 IPR027417 -
Acco08g2189 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 592 IPR027417 -
Acco08g2189 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Acco08g2189 623 SMART ultradead3 192 419 IPR014001 -
Acco08g2189 623 SMART helicmild6 491 572 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2189 Acco-ChrAcco08 37260043 37264160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2189 173 602 Eukaryotic Initiation Factors Gene Family AT3G13920 26.196 1.33e-39 148