Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2175 ATGGCAAATCAACTCTATCGCTATGCGTATAGCCCTACCTACGGAGGAGCTTCACCGCCTTCCGCCGCCGCCACAACCACTGCCAGTACCCTTTCCTCCAGCCGATATTTTTCTACTGATATGTATTTTCCTCAACGTAAAGACTCCATTCTTCGATACTCCTCTTATGCTGCTTCCGATGCCGACATTGGCCCACCTGGTGTTTCTACCAGGCTCTCCAGCGCTGCCTCCGGCCATACATCTTCCACCGCTACTCAGTTCCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCAAATGTTGGTTCTTCTGCATTGGACTCGATTATTAACCTGAAACGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAACACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGATACGAGAGTACAAGTCACTTGCCTATATACCCACAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGCTACAAGTGAGACTCTTCCCGAGAGACCAGCAGAACCAGATTGTCCATACTTTCTGAAAACTAAGAGATGCAAGTTTGGTTTAAGGTGCAAGTTTAATCATCCCATGCATTTGATTGAAAATGCTGATGTTTCTACATTACCAGAGAGGCCTTCGGAGCCCCCATGCGCGTTCTACATGAAAACTGGAAAATGCAAGTTTGGTATTACCTGCAAATTTCATCACCCAAAAGACATACAGATTCAGCTATGTGAAGAACAGAATGGTGCTGTTGAGCAGACCCACTTGACCCCTCATATAAAGGGGGCTTCAGGAGATGCACAATTATCTAATCCTTTTAGTTCGTACACTGCTCCTGTATGGCAGAATAGCAAAGGGCTTCCTATCAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGCTGCAAATATGGTGCTACGTGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCACCTGCTACTGGGTTGGGCCATTCTGTTTTGACATCAGCAGCTGCTAATCTTAACTTTGGAATTGTAAACCCAGCTGCATCTATTTATCAAGCTATTGACCCCAGATTATCAAGTGCAACGTCCCAGGTGGGAGTAGCACCAACCTTCTATCCCCAACGACCAGGACAGATTGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAATTATGCAAGTTCCATCACCCAATCGACCGCTCAGCACCATCACAATCAAATTCAGCCGCACAACAAGCCGTTAAACTCACTCCTGCAGGATTACCGAGGAGAGAGGGTTCTGTAATCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAAGCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAGGTTATGAGGTAGGAGAGGAAGCCGAAGCCGATGAAAAACAGGCTGATTCTGTTCAGGAAAAGAAATGA 1608 0.4558 MANQLYRYAYSPTYGGASPPSAAATTTASTLSSSRYFSTDMYFPQRKDSILRYSSYAASDADIGPPGVSTRLSSAASGHTSSTATQFLSQASWPAAIAAANVGSSALDSIINLKRSSDALYHPTVLQTHNTIGQSEAWYSTNSLTKRPRYESTSHLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPNVATSETLPERPAEPDCPYFLKTKRCKFGLRCKFNHPMHLIENADVSTLPERPSEPPCAFYMKTGKCKFGITCKFHHPKDIQIQLCEEQNGAVEQTHLTPHIKGASGDAQLSNPFSSYTAPVWQNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPATGLGHSVLTSAAANLNFGIVNPAASIYQAIDPRLSSATSQVGVAPTFYPQRPGQIECDYYMKTGECKFGELCKFHHPIDRSAPSQSNSAAQQAVKLTPAGLPRREGSVICPYYLKTGTCKFGASCKFDHPPPGEVMEMAKSQGGYEVGEEAEADEKQADSVQEKK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 474 501 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 421 448 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 335 362 IPR000571 GO:0046872
Acco08g2175 535 SMART c3hfinal6 255 282 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 164 188 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 424 447 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 338 361 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 477 501 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 282 IPR000571 GO:0046872
Acco08g2175 535 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 241 IPR000571 GO:0046872
Acco08g2175 535 FunFam Zinc finger CCCH domain-containing protein 37 118 199 - -
Acco08g2175 535 FunFam zinc finger CCCH domain-containing protein 37 419 515 - -
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 474 502 IPR000571 GO:0046872
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Acco08g2175 535 PANTHER PROTEIN PHOSPHATASE RELATED 323 372 - -
Acco08g2175 535 SUPERFAMILY CCCH zinc finger 477 501 IPR036855 GO:0046872
Acco08g2175 535 SUPERFAMILY CCCH zinc finger 258 283 IPR036855 GO:0046872
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Acco08g2175 535 Gene3D - 248 293 - -
Acco08g2175 535 Gene3D - 325 367 - -
Acco08g2175 535 MobiDBLite consensus disorder prediction 517 535 - -
Acco08g2175 535 SUPERFAMILY CCCH zinc finger 219 242 IPR036855 GO:0046872
Acco08g2175 535 Gene3D - 160 247 - -
Acco08g2175 535 Gene3D - 419 514 - -
Acco08g2175 535 SUPERFAMILY CCCH zinc finger 423 449 IPR036855 GO:0046872
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 255 283 IPR000571 GO:0046872
Acco08g2175 535 ProSiteProfiles Zinc finger C3H1-type profile. 421 449 IPR000571 GO:0046872
Acco08g2175 535 SUPERFAMILY CCCH zinc finger 339 363 IPR036855 GO:0046872
Acco08g2175 535 MobiDBLite consensus disorder prediction 506 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2175 Acco-ChrAcco08 37130310 37142139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2175 472 515 C2H2 Transcription Factor Family AT3G02830 44.444 9.97e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g2175 zf-CCCH 9.9e-11 CL0537