Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2172 ATGCCAGGAAGTGGACAAGTGACAGTTCCTCCAGGTTTCAGGTTTCACCCAACAGATGAAGAACTTCTTTACTATTACCTGAGGAAGAAGGTCTCTTATGAAGCCATTGACCTTAACGTCATCAGAGAAGTTGATCTTAACAAGCTTGAACCGTGGGACCTCAAAGACAAGTGTAGAATTGGATCAGGGCCACAGAACGAGTGGTATTTCTTTAGCCACAAGGACAAGAAGTACCCAACAGGAACAAGAACAAATAGGGCAACTACAGCTGGGTTTTGGAAGGCCACTGGAAGGGACAAGGCCATATATCTCACTAATTCTAAGAGGATTGGCCTGAGGAAAACCCTAGTCTTCTACACCGGCCGTGCTCCTCACGGCCAAAAGACCGATTGGATCATGCACGAGTATCGTCTCGACGAAGATGACATCCACGTTCAGGAAGATGGGTGGGTAGTGTGTAAGGTTTTCACAAAGAAGAACCTTAATAGAGGCTACCAAACAGCAGAAAAGGAGGAAGAAGAAGAAGAGTACTTAGCTAGCCAAATGAGAACAAAAAGTGGATCAAACCAGAACCAAGTATTAGACCCAAAACAACAACATTACCTTCATCATCATCACATGCAAGCACTATATGATCTTCATCATCAACAACAACAAAACTATAGCCTTGAAGGATCAATACAACACATTCCCCAATTATTCAGTCCTGAATCTGCCGCGGTATTACCGGCAGCCGCCGTCACCGACCAAGCAGTCGAGTGCTCTCAGAACTTGTTGAGGCTCACAAGCACAACAACAAGTGGTGGTGGACTAAATCTTAATCTCAATCATTATAATAATGACGATCACTGGTCATTTTTGGACAAGCTTCTTGCTTCACAAAACCACAGATACGTGTCTTCACATGATCATCAAGCTGGTTTGGCTTTTTCAACCTTCCAGAAATTCCCAGCTTCTGTTCATTACCTTGGGTGTGACCCTCGTGACCTTGTCAGGTTCTCTAAGTAG 1008 0.4425 MPGSGQVTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLNVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLTNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDIHVQEDGWVVCKVFTKKNLNRGYQTAEKEEEEEEYLASQMRTKSGSNQNQVLDPKQQHYLHHHHMQALYDLHHQQQQNYSLEGSIQHIPQLFSPESAAVLPAAAVTDQAVECSQNLLRLTSTTTSGGGLNLNLNHYNNDDHWSFLDKLLASQNHRYVSSHDHQAGLAFSTFQKFPASVHYLGCDPRDLVRFSK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2172 335 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Acco08g2172 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 219 - -
Acco08g2172 335 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Acco08g2172 335 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Acco08g2172 335 FunFam NAC domain-containing protein 18 162 - -
Acco08g2172 335 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2172 Acco-ChrAcco08 37058396 37060660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2172 1 293 NAC Transcription Factor Family AT1G79580 57.372 7.55e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco08g2172 NAM 1.6e-37 No_clan