Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2148 ATGGGCTTCTTTTCTCACATGTCTCTTCCTTTCGCATTGTACGTTTTTCCTTGCATCATTTTTCTCTGTATATCATCATCAACCGCTCTAGACATCACCACAGATGCAGAAGCTTTGATCTCGTTTAAGTCTCAATTGAGTAACACAGAAGCTTTATCTTCTTGGAATCACAGTTCATCATCACCCTGCAACTGGCATGGTGTAACCTGCAACAGGAAACGTCAAAGAGTTATAGGCTTAAATTTTTCAGGCCTAAAACTCTCAGGTCAGTTAAGTCCTAGTCTAGGTAATCTCACTTTTCTTCAGTCTATCCAGTTGCCGAAAAACCAATTCACAGGAGTGATTCCTGAGCAAATAGGCCATCTAGTTCGGTTAAGAGCTCTAAACATGAGTTCTAACAGTATAGAGGGTATGCTTCCTTCAAACATCACTCGCTTGACCAAGCTTGTGACACTCGACTTATCCGCAAACACAATAGCCAGCAAAATTCCTCAAGATATTGACAGCTTGACAGAGCTTCGAGTCTTGAGATTAGGAAGCAATAGATTGTATGGAATAGTTCCACCAACTCTCGGGAATATTTCATCTCTTGCAAATATCAGTCTTGGCACAAACAGTCTAAGTGGTGGGATTCCCAGTGAATTAGGTAGGCTAAAGAACTTAATTGAGCTTGATCTCACTATTAACAAACTCACTGGGACTATTCCTTCTTCTATATATAATTTATCCTCCCTAGTTAACTTGGCTGTCGCTTCCAACGACTTTTGGGGTGATATTCCTCAGGATGTTGGACACCGACTTCCAAAACTTGTAGTGTTCAATTTCTGCTTTAATAGATTCACAGGCAGAATTCCTTGGTCTTTGCACAATCTCACCAACATTCAAGTCATCCGCATGGCTGCCAACCTTTTGGAAGGAACCGTGCCGCCAGGTTTTGGAAATCTTCCCTTCCTTCGTATGTACAATATAGGGTACAATAGGATAGTAAGTTCAGGAGATAGAGGCCTAGACTTCATTACCTCATTGGCAAACAGCACTCTCTTGAACTTTCTTGCAATTGATGGCAATAGGCTGGAAGGTGTCATTCCAGAGACCATTGGAAATCTCTCCAAGGTTCTCTCAAAATTATACATGGGAGGGAATCGTTTCCGTGGAAACATACCCACTTCGATTGGAGATCTTAGAGGCTTGAGTTTATTAAACTTGAGTCACAATGCAATCTCAGGAGAAATTCCAGTCAAGTTAAGCCAACTGGAAAACTTACAAGAACTCAGTCTGGCTGGGAATCAGATATCAGGAAGTATTCCAAACTCCCTTGGGCGTCTCCAAAAGCTGAATAGTCTTGATTTGTCACGCAATGAGCTTGTGGGTGAAATACCTTCAAGTTTTGGGAATTTTCAAGACATTGATTCCATGGACTTATCTTACAACAAGCTCAATGGAAGCATACCAAGAGAAGTACTCAGTCTCTCATCTCTCACCACTTATTTAAACGTTTCTAAGAACCTTTTGAGTGGATCTTTGCCTCAAGAAATAGGGGGGTTGATCAAAGTTTCAACCCTAGACTTCTCAGACAACCTTTTAGACGGTGAAATCCCCAGCTCCATCGGCAACTGTATAAGCCTAGAATATCTAACTTTGGCACGAAATATGCTTTCTGGTGTTATTCCAAAAACTCTTGGAAGCATAAGAGGCTTGGAAATTCTAGACCTTTCCTCCAACAAAATCTCTGGATCTGTTCCTGTTGAACTTCAAAATCTAAATGCCCTTCGGTTATTGAACCTTTCTTATAATGACTTAGAAGGAGTCATTCCCAGTGGTGGAGTTTTCAAAAATATCTCTTCTTTCCATTTTGATTTTGGAGGCAATAAGAAACTATGCTCGCTCTCCTCATGTGTTGCTCGAGGGCAAGGAAGAAAGATGCTCATAATTTATATCACCGTATCTGTTGTCATAACATTGATACTATGTTTTGCGTTTGGCTTTCTGCTGTATGTGAGGAGAAGAAAAACAAAGGCAATAACACCACCTGAACTGGAAAAGCCGCAACATCCAATGGTCTCTTATGATGAGCTTCGAAGAGCGACTGGAAACTTCAGCCAAGAAAATTTACTGGGAATTGGAAGTTTTGGTTCAGTCTATAGAGGCTTTCTTAGTGAATGGAATGCTGTTGCAGTAAAAGTCCTAGATACTTCAAGATCAAGATCCTTGAAGAGTTTCTATGCAGAATGTGAGGCATTAAGGAATGTAAGGCATCGAAATCTGGTTAAGCTCATCACATCATGTTCCAGTATGGACTTCAAGAACCAAGAATTTCTGGCTTTGGTTTATGAGTTCATATGTAGTGGAAACTTGGATGATTGGATTAAGGGAAAGAGAAAGCATGCAAATGGAAATGTGTTGAATCTTATGGAGAGACTGAACATTGCTATTGGTGTTGCTTGTGCATTGGATTATCTGCACAATGACACTGAAACCCCTATTGTGCACTGTGATTTGAAGCCTAGCAATATTCTTCTGTGTGAAGATATGACTGCAAAGGTGGGTGATTTTGGATTAGCCAGAGTGTTGATTGAAAGACCAATTAATCAAGTCTCAATAAGCTCCACTCATGTTCTCAAAGGTTCAGTCGGTTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTAGCAGGAGATACGTACAGTTTTGGAATTGTGCTGTTGGAGCTCTTTTCTGGGAGGAGCCCAACAGATGATAGCTTCACAGGTGGCTCAAGCTTAACAAGATGGGTTCAATCAGCTTTCCCAGATAAGTCTGAGCAAGTCATAGACCCTCAGCTTCTGTCACACATTTTTCACAATGACCTTGCTGATAATAAAGGTCCAAATCTACAACTTGATTGTGTGACTGTAGTTTTGGGAGTAGGGTTATCCTGCACTGCAGAATCTCCAGATGGACGCCTTAAGATGAAACATGCTGTTGCAAAATTAAAACTTGTCAGAGATAAAATTTCCAAGCTCAATCAAAACAAGGGCCCTTCAGGGAATTAG 3039 0.409 MGFFSHMSLPFALYVFPCIIFLCISSSTALDITTDAEALISFKSQLSNTEALSSWNHSSSSPCNWHGVTCNRKRQRVIGLNFSGLKLSGQLSPSLGNLTFLQSIQLPKNQFTGVIPEQIGHLVRLRALNMSSNSIEGMLPSNITRLTKLVTLDLSANTIASKIPQDIDSLTELRVLRLGSNRLYGIVPPTLGNISSLANISLGTNSLSGGIPSELGRLKNLIELDLTINKLTGTIPSSIYNLSSLVNLAVASNDFWGDIPQDVGHRLPKLVVFNFCFNRFTGRIPWSLHNLTNIQVIRMAANLLEGTVPPGFGNLPFLRMYNIGYNRIVSSGDRGLDFITSLANSTLLNFLAIDGNRLEGVIPETIGNLSKVLSKLYMGGNRFRGNIPTSIGDLRGLSLLNLSHNAISGEIPVKLSQLENLQELSLAGNQISGSIPNSLGRLQKLNSLDLSRNELVGEIPSSFGNFQDIDSMDLSYNKLNGSIPREVLSLSSLTTYLNVSKNLLSGSLPQEIGGLIKVSTLDFSDNLLDGEIPSSIGNCISLEYLTLARNMLSGVIPKTLGSIRGLEILDLSSNKISGSVPVELQNLNALRLLNLSYNDLEGVIPSGGVFKNISSFHFDFGGNKKLCSLSSCVARGQGRKMLIIYITVSVVITLILCFAFGFLLYVRRRKTKAITPPELEKPQHPMVSYDELRRATGNFSQENLLGIGSFGSVYRGFLSEWNAVAVKVLDTSRSRSLKSFYAECEALRNVRHRNLVKLITSCSSMDFKNQEFLALVYEFICSGNLDDWIKGKRKHANGNVLNLMERLNIAIGVACALDYLHNDTETPIVHCDLKPSNILLCEDMTAKVGDFGLARVLIERPINQVSISSTHVLKGSVGYIPPEYGWGEKPSVAGDTYSFGIVLLELFSGRSPTDDSFTGGSSLTRWVQSAFPDKSEQVIDPQLLSHIFHNDLADNKGPNLQLDCVTVVLGVGLSCTAESPDGRLKMKHAVAKLKLVRDKISKLNQNKGPSGN 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2148 1012 Pfam Leucine Rich Repeat 444 466 IPR001611 GO:0005515
Acco08g2148 1012 Pfam Leucine Rich Repeat 420 441 IPR001611 GO:0005515
Acco08g2148 1012 FunFam LRR receptor-like serine/threonine-protein kinase EFR 335 635 - -
Acco08g2148 1012 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Acco08g2148 1012 SMART LRR_sd22_2 218 244 - -
Acco08g2148 1012 SMART LRR_sd22_2 146 169 - -
Acco08g2148 1012 SMART LRR_sd22_2 563 589 - -
Acco08g2148 1012 SMART LRR_sd22_2 418 450 - -
Acco08g2148 1012 SMART LRR_sd22_2 170 196 - -
Acco08g2148 1012 ProSitePatterns Protein kinases ATP-binding region signature. 705 727 IPR017441 GO:0005524
Acco08g2148 1012 SMART LRR_typ_2 122 146 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 394 417 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 563 586 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 490 515 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 170 193 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 587 612 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 418 441 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 218 242 IPR003591 -
Acco08g2148 1012 SMART LRR_typ_2 442 465 IPR003591 -
Acco08g2148 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 228 334 - -
Acco08g2148 1012 SUPERFAMILY L domain-like 37 328 - -
Acco08g2148 1012 PANTHER OS04G0122200 PROTEIN 216 994 - -
Acco08g2148 1012 SMART serkin_6 699 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2148 1012 Gene3D Ribonuclease Inhibitor 334 634 IPR032675 -
Acco08g2148 1012 ProSiteProfiles Leucine-rich repeat profile. 420 442 IPR001611 GO:0005515
Acco08g2148 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Acco08g2148 1012 SUPERFAMILY L domain-like 372 630 - -
Acco08g2148 1012 SUPERFAMILY Protein kinase-like (PK-like) 678 993 IPR011009 -
Acco08g2148 1012 Gene3D Ribonuclease Inhibitor 257 333 IPR032675 -
Acco08g2148 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 780 1006 - -
Acco08g2148 1012 Gene3D Ribonuclease Inhibitor 31 256 IPR032675 -
Acco08g2148 1012 Gene3D Phosphorylase Kinase; domain 1 680 779 - -
Acco08g2148 1012 Gene3D Transferase(Phosphotransferase) domain 1 781 1009 - -
Acco08g2148 1012 Coils Coil 986 1006 - -
Acco08g2148 1012 Pfam Leucine rich repeat 541 600 IPR001611 GO:0005515
Acco08g2148 1012 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Acco08g2148 1012 ProSiteProfiles Protein kinase domain profile. 699 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g2148 1012 FunFam LRR receptor-like serine/threonine-protein kinase EFR 670 779 - -
Acco08g2148 1012 Pfam Protein tyrosine and serine/threonine kinase 702 928 IPR001245 GO:0004672|GO:0006468
Acco08g2148 1012 FunFam Leucine-rich repeat receptor-like protein kinase 32 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2148 Acco-ChrAcco08 36589626 36592780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2148 34 1002 Receptor kinase-like Gene Family AT3G47570 41.825 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Acco08g2148 PK_Tyr_Ser-Thr 1.6e-36 CL0016