Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2107 ATGGATTCAATTCACCACTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAACCTCATTTCTGGCAAGCCTGGTTCAGAATAGCCATGGATGTGTGAATGAGGAAGCTTCTAGAAGCATAGATCATCATCACAATCCATCTTCAAGTTCAGAAATGGAAGCCATGTTGGCCAAGTTGATTTCTTCATCATCAAACAATGGATGGATCAAGCAGGAAGAAACAGGGGACTCTGTTTCAGAGGGACACAATGGGTATAATTCTAATTATGATTCTCAGATGATTTACAAATCTCAGCGGACTCATCAAGCTGTTCCAGGCTTGCCAAATGGGTCTTCAGGTTCTTCTGGGAATTCTTTTGATGGCTCATTCAATTCCACTGAGTCCAAAATAATAAGGCCCAATAATCTCTTTAGGCAGAAAAGTTCCCCAGCTGGATTGTTCAACAATTTCTCAGTCGAAAATGGTTTTGCAACATGGAGAGACGTGGGAAGCTTTAGAGGATGTGATCACGTCTCAAATGGTCAAGCTTCTGCCTCAGCTAGTGGGTTAAATGAGAATAATACTTTGACCTTTTCATCTAGGCCATCTTCTTGTTCAAGACAATTACCTGATATAGCTGAAGATAGGAATGAAACCCTAGAAGAAGACACTTGTATTGACACTAGAAGAAATCTGAGAAATGACAACAATGGCAACAACAACAATACTGAATGTTACATTCCCAGCTTCACAAGTGACTTCTGGGATGGTCCTTCATTTAATGACACTAAAACAGCTAGTGACAAAGATGAACTCATGTTCACTACTACTTCAAATGGTTTTGAAACTCAGAGTGCTGATTTTGGGTATCAGAATGTTGGGTTGACTCATCATTTGAGTTTGCCAAGTTCTTGTACAAAGTCAAAGATGAGTGCCATTGAGAAGTTTCTTCAAGTTCAAGAATCCGTTCCTTGTAAGATTCGAGCGAAAAGAGGTTTCGCCACTCACCCACGGAGTATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATAAAGAAGTTGCAAGAGCTCTTCCCAAAATCTGAAAAGCAAACAAGCACAGCTGATATGTTGGATTTGGCAGTTGATTATATTAAAGACTTGCAGAAACAAGTTCAGATGCTCACAGATACTAAAGCAAAGTGCAAGTGTTCAAGTAACCAGAAGCAGAACCCAGTGACCTGTAGTTAG 1218 0.4015 MDSIHHLNSGLMRYSSAPTSFLASLVQNSHGCVNEEASRSIDHHHNPSSSSEMEAMLAKLISSSSNNGWIKQEETGDSVSEGHNGYNSNYDSQMIYKSQRTHQAVPGLPNGSSGSSGNSFDGSFNSTESKIIRPNNLFRQKSSPAGLFNNFSVENGFATWRDVGSFRGCDHVSNGQASASASGLNENNTLTFSSRPSSCSRQLPDIAEDRNETLEEDTCIDTRRNLRNDNNGNNNNTECYIPSFTSDFWDGPSFNDTKTASDKDELMFTTTSNGFETQSADFGYQNVGLTHHLSLPSSCTKSKMSAIEKFLQVQESVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQELFPKSEKQTSTADMLDLAVDYIKDLQKQVQMLTDTKAKCKCSSNQKQNPVTCS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2107 405 Gene3D - 329 401 IPR036638 GO:0046983
Acco08g2107 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 397 - -
Acco08g2107 405 SMART finulus 333 383 IPR011598 GO:0046983
Acco08g2107 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 393 IPR036638 GO:0046983
Acco08g2107 405 Pfam Helix-loop-helix DNA-binding domain 333 378 IPR011598 GO:0046983
Acco08g2107 405 MobiDBLite consensus disorder prediction 100 126 - -
Acco08g2107 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Acco08g2107 405 MobiDBLite consensus disorder prediction 68 87 - -
Acco08g2107 405 FunFam Transcription factor bHLH130 family 328 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2107 Acco-ChrAcco08 35997736 35999703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2107 1 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 33.911 2.23e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco08g2107 HLH 3.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g2107 08 35997736 35999703 Acco08g2107 08 35997736 35999703 ECH