Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2086 ATGTTTATCTTACATGAGTTGGATCTTGAGGGCTTAATGGGGTTAGGGCTGGTTTCAAGACTTAGAGTGATTACCGAGATCTCCCTATGTCGAAGAGGTAAATTGTTCTTTTTTTTCCATTGTGACTCAAATTCGACTAAATCTGATGTTATTGCTTCATTAATTGAGTATTGCAAGTTCTTTGCTCGTGGAGCATGTATCAAAGGGGACCAATGTGAATACTCTCATGGCAGAAAGAATCCTTCAATTAATATTTGCAGGTACTATCAGAAAGGGATATGTGCTTTTGGTAGTCAATGCAAATATAAACATATCCAAACATCTCAAGCACAATCTTTGGAACATGGAAGCCAGCTCCTGAGTTTTGATAGACATGGAAAGAGTATAAAACTTGAGCAGGATGATTACCAAAAAAATTGTGATGCCGGAGAACCCAGTACTGCTTTGCCATCAAGAAAAAAGTGTTATTGTGTTCCTGGAGAACGATGTGTGTACTGTAAAAAGTTCTGCTTGTATCATTCTGAACCAAATGAAAAGGAGGAGCATTTGCAAACTTGCGAGAAAAAGGAAAAGTACCTTGAGACTTTGAATAAAAGTCAAGAAATAGAGTGCAGAATCTGCTATGAACTTGTTCTTTCAAAGCCTAAAGCAGATGAATGCAAGTTTGGTATTCTTTCTGAGTGCGATCATCCTTTTTGTATATCATGTATCAGGAATTGGCGTAGTAGTGCTCCAACCTTAGTAAGAAGGTCCCAGTCCAATAGAAATGTGAAGACCTGCCCCATGTGCCGGAAATTATCGTATTATGTTATTCCAAGTACCATTTGGTATTTTACAATGGAAGAGAAACAGGAAATTATTGACAACTACAAGACAAGCTGCAAGTTGATTAATTGCAGGCATTTTGACTTCGGAAATGGATATTGTCCCTTCAGGAATATTTGTTTCTACAGGCATACTGTGAGGCCTGGTTCATATACATGGATACATCACAAACCACCACCACCACCCAGATCCTTTCTTATGAATTTGCTCGAACAATTTTTTCTGAGATTAGAGATGCCTTCAATTTTGGAGATTTTTTATGATATGGATCTGTCAGAGATATTGCGGTTACTGGAGTCACTAGTTAATTCAATGCAGCTTGATGCTGACATCTCAAATGATGAAACTGACGCTTTTAGCTTGCCTGCAATGTCAGAAGTTTTAGATTCTAGTTCAGACTCCATTGATTCTGTAGACTTGGATCTATTTGAGCTTATACCATCAACTCATCAAGCTCCGGATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATCAAGAAATGGGCATTGTGCCTTCTCCGGCAGAGCAGGTTGGTTCTTCTTTGCCTGATTCTGATATGGCTCCATCGGAGGAGACACTCGGTAGTTTGTCTGGTCATGAAGATCCTTAA 1440 0.3896 MFILHELDLEGLMGLGLVSRLRVITEISLCRRGKLFFFFHCDSNSTKSDVIASLIEYCKFFARGACIKGDQCEYSHGRKNPSINICRYYQKGICAFGSQCKYKHIQTSQAQSLEHGSQLLSFDRHGKSIKLEQDDYQKNCDAGEPSTALPSRKKCYCVPGERCVYCKKFCLYHSEPNEKEEHLQTCEKKEKYLETLNKSQEIECRICYELVLSKPKADECKFGILSECDHPFCISCIRNWRSSAPTLVRRSQSNRNVKTCPMCRKLSYYVIPSTIWYFTMEEKQEIIDNYKTSCKLINCRHFDFGNGYCPFRNICFYRHTVRPGSYTWIHHKPPPPPRSFLMNLLEQFFLRLEMPSILEIFYDMDLSEILRLLESLVNSMQLDADISNDETDAFSLPAMSEVLDSSSDSIDSVDLDLFELIPSTHQAPDGSWWFGIEGFDDQEMGIVPSPAEQVGSSLPDSDMAPSEETLGSLSGHEDP 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2086 479 CDD RING-HC_MKRN 202 264 - -
Acco08g2086 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 280 IPR013083 -
Acco08g2086 479 SMART ring_2 204 263 IPR001841 -
Acco08g2086 479 SUPERFAMILY CCCH zinc finger 82 104 IPR036855 GO:0046872
Acco08g2086 479 Pfam Zinc finger, C3HC4 type (RING finger) 204 263 IPR018957 GO:0046872
Acco08g2086 479 SMART c3hfinal6 52 78 IPR000571 GO:0046872
Acco08g2086 479 SMART c3hfinal6 293 321 IPR000571 GO:0046872
Acco08g2086 479 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Acco08g2086 479 MobiDBLite consensus disorder prediction 445 479 - -
Acco08g2086 479 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Acco08g2086 479 SUPERFAMILY RING/U-box 194 270 - -
Acco08g2086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 78 IPR000571 GO:0046872
Acco08g2086 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 105 IPR000571 GO:0046872
Acco08g2086 479 Gene3D - 43 115 - -
Acco08g2086 479 ProSiteProfiles Zinc finger RING-type profile. 204 264 IPR001841 -
Acco08g2086 479 PANTHER MAKORIN-RELATED 58 340 IPR045072 GO:0000209|GO:0061630
Acco08g2086 479 ProSiteProfiles Zinc finger C3H1-type profile. 57 79 IPR000571 GO:0046872
Acco08g2086 479 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Acco08g2086 479 ProSiteProfiles Zinc finger C3H1-type profile. 293 322 IPR000571 GO:0046872
Acco08g2086 479 SUPERFAMILY CCCH zinc finger 55 77 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2086 Acco-ChrAcco08 35840723 35844692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g2086 zf-C3HC4 3.8e-07 CL0229