Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2073 ATGACAGATCCTCAGTCTTGGTTCAACTTCATCCCTGTTCTTCATCCTTCTCATCAATCCAATGACGCCTGTAATAATTCCTTATACCCTCAACTTCATGCTCATCAGTACTCAAATAATCACTGCACATCATCATCATCTTCAATTATTCATCAACACCAAAGCTCTTCTAGTTCTTCCTCTTTAGACCATCCTCCAAATTCTCCTCCTCTCAAAGAAGCCCTTCCTCTCATAAACAATTTAAGCCTCACAACAAGTGAACTCTCAAAGAGAGCCCTCGAAGAGGAAGAGGAAGAAAAGAATGAGAGAATTGAGAAAGAATACCAAGAAGATGGCGACAAAGACGAAGACGATAGAGAAACTGTAACTGTCGCCCTAGGGATAGGGCTTCCTAATAGTATGAACACTGCATCTTCATCTTCTTCTTCTTCTTTTCATATGGGGTCAAGCAGGCAGATCTCAAATTGTGTTGAAATGGCTGAAAAAGAGGAACTTGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTTTTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTATGCTTTAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCCCTAAAAGGAACACAACCAACGGGAATGCTAAGGCTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAGCACCCAAGGGCAAGACCATTGAAGGACTTCAGGACACTTCAGACTCACTACAAGAGAAAGCATGGCATCAAACCCTACACGTGTCGGAAATGTACTAAGCCCTTCGCCGTCAAAGGCGATTGGCGAACCCACGAGAAGAACTGTGGCAAGCTCTGGTACTGTCTTTGTGGTTCTGACTTTAAACACAAGAGGTCTCTTAAAGATCACATCAAGGCCTTTGGTCATGGACATGCTGCTTGTTGCTTGTATGATCAAGATGATGAACCAGCTTCTGAGAATGAACAAGATGGTGAGAGCTAG 1062 0.4294 MTDPQSWFNFIPVLHPSHQSNDACNNSLYPQLHAHQYSNNHCTSSSSSIIHQHQSSSSSSSLDHPPNSPPLKEALPLINNLSLTTSELSKRALEEEEEEKNERIEKEYQEDGDKDEDDRETVTVALGIGLPNSMNTASSSSSSSFHMGSSRQISNCVEMAEKEELGLVSGYPLERLNKGQFWIPTPSQILIGPTQFSCPLCFKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYTCRKCTKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIKAFGHGHAACCLYDQDDEPASENEQDGES 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2073 353 MobiDBLite consensus disorder prediction 89 110 - -
Acco08g2073 353 Coils Coil 83 114 - -
Acco08g2073 353 Gene3D Classic Zinc Finger 195 218 - -
Acco08g2073 353 MobiDBLite consensus disorder prediction 39 74 - -
Acco08g2073 353 FunFam Zinc finger protein WIP2 249 331 - -
Acco08g2073 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Acco08g2073 353 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Acco08g2073 353 MobiDBLite consensus disorder prediction 39 66 - -
Acco08g2073 353 SUPERFAMILY beta-beta-alpha zinc fingers 189 218 IPR036236 -
Acco08g2073 353 Gene3D Classic Zinc Finger 235 329 - -
Acco08g2073 353 SMART c2h2final6 280 300 IPR013087 -
Acco08g2073 353 SMART c2h2final6 196 218 IPR013087 -
Acco08g2073 353 SMART c2h2final6 306 329 IPR013087 -
Acco08g2073 353 MobiDBLite consensus disorder prediction 89 118 - -
Acco08g2073 353 SUPERFAMILY beta-beta-alpha zinc fingers 264 300 IPR036236 -
Acco08g2073 353 PANTHER ZINC FINGER PROTEIN WIP2 34 348 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2073 Acco-ChrAcco08 35609999 35613901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2073 122 349 C2H2 Transcription Factor Family AT3G57670 66.932 4.16e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco08g2073 None None None