Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2057 ATGAAAAAGCTAACTGTTCATACAGAAGATTCTTTTTCCAGCCTACTGGAGCTTGCTGCTAACAATGATGTTGAAGGTTTTAAGTTACTGCTAGATAGGGATGTTTCTTCAGTAAATGAAGTTGGGCTTTGGTATTGTCGCCAGATTGGGTCAAAACAAATTATTCTTGACGATAGAACTCCATTAATGGTTGCTGCTACCTATGGCAGTATTGATGTTGTTAAGCTTATACTATCTTATCCAGAGGTCAATGTTGATTTCACGTGTGGGATAAGCAAGAGTACTGCCCTTCACTGTGCTGCTTCAGGCGGATCTAATAATGCAGTTGAAGTTGTGAAGCTTCTTTTAGAAGCTGGTGCTGATCTTAGTTGCAGTGATGCTAGTGGAAATCGTCCTGTTGATGTTATTGTTGTTCACCCGAAGCTGCAAGTCATGAGAGCAATTCTGGAGGAACTTCTTTCTGATAGGGCGTCTCATGACAACTCTGGTGACTGCTCTATTCCAGTACCTGTTAATCCATCAAGTCCTGGTTTACCTGCCCATTTATTTTCTCCTGAGAATGGATTACCATCATCTCCTTCGGGCTCACCTTCTTCTCCAGTGGCCTCAAAGTTTGCTGATACCCCTGTTAGCTTTACCTCGGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATTTATGCGACGGACGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCTTGCTCTCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAATTTCATTACAGCTGTGTACCATGCCCTGATTTTCAGAAGGGTGCTTGTAGGCGAGGGGATATGTGTGAATATGCACATGGAGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGACTCTGCAAAGATGGCACAAATTGCAACAGAAGGGTGTGCTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTGTCCCTTCTCCAAGAGCATCTGCGTCTGCTCCCAATGTTATGGATATGGCTGCTGCAATGAACCTGTTGCCTGGTTCTCTTTCATCAGTGTCTTCTATGTCACCATCTCACTTCACCCAGCCGATGTCTCCATCTGGTAATAGCATTTCACACTCATCTGCAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCAGGAGGTAATCTCCAATCTAGTCGTTTAAGATCTTCTCTCAATGCACGTGACATTCCACCACAGGGCTTGAACATGTTGTCAGAATTTGATGGCCAGCAACACCTCTTGAATGATCTGGGCTGTTTCTCACAGCCTCGTTCTGGTTCTGTTTCTTTGAGCCGATCTGGTCGGTCCAAGACGTTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAATTTCTTCATCTCCTCGGTATTCTGATCCAGCAGCAGGTTCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTATGCTGTCACCCATAAATACAAATGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAAGCTCCATTTGGCGTGTCTTCTCCTGGAAGGATGTCGCCTAGAAGTGTGGATCCAATATCTCCCATGAGCTCTCGGTTATCTCCTTTTGCACAGCGTGAGAAACAGCAGCAGCAACAGCTGCGAAGTCTTAGCTCAAGGGACCTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGAAACTCATGGTCTAATTGGGGATCTCCTACTGGTAAAGTTGATTGGTCAATGAATGGAGATGAATTGGGTCGATTGCGAAAATTGTCTTCATTTGAGCATGGTAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTTGTCAAGGAATCCCCACCTGAGATGACGAAAGAGAAGCTGGCTGCTTCTGGTCCCATGGCATCTGGGGAAAAACTGAATTCAATATCTCAAGTTGAATCAATTGATAATTCGGTGGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTAG 2115 0.4487 MKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSVNEVGLWYCRQIGSKQIILDDRTPLMVAATYGSIDVVKLILSYPEVNVDFTCGISKSTALHCAASGGSNNAVEVVKLLLEAGADLSCSDASGNRPVDVIVVHPKLQVMRAILEELLSDRASHDNSGDCSIPVPVNPSSPGLPAHLFSPENGLPSSPSGSPSSPVASKFADTPVSFTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNSISHSSAAWPQPNVPALHLPGGNLQSSRLRSSLNARDIPPQGLNMLSEFDGQQHLLNDLGCFSQPRSGSVSLSRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNVLSPKNAEHPLLQAPFGVSSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQLRSLSSRDLGSKIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKLSSFEHGNNGEEPDLSWVQSLVKESPPEMTKEKLAASGPMASGEKLNSISQVESIDNSVVGAWLEQMQLDQLAV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2057 704 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Acco08g2057 704 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Acco08g2057 704 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Acco08g2057 704 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Acco08g2057 704 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Acco08g2057 704 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Acco08g2057 704 MobiDBLite consensus disorder prediction 382 422 - -
Acco08g2057 704 ProSiteProfiles Ankyrin repeat region circular profile. 57 79 - -
Acco08g2057 704 MobiDBLite consensus disorder prediction 382 405 - -
Acco08g2057 704 Gene3D - 1 169 IPR036770 -
Acco08g2057 704 Pfam Ankyrin repeats (3 copies) 18 125 IPR002110 GO:0005515
Acco08g2057 704 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Acco08g2057 704 ProSiteProfiles Ankyrin repeat profile. 57 79 IPR002110 GO:0005515
Acco08g2057 704 Gene3D - 277 340 - -
Acco08g2057 704 SMART ANK_2a 10 40 IPR002110 GO:0005515
Acco08g2057 704 SMART ANK_2a 92 124 IPR002110 GO:0005515
Acco08g2057 704 SMART ANK_2a 57 87 IPR002110 GO:0005515
Acco08g2057 704 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Acco08g2057 704 MobiDBLite consensus disorder prediction 187 205 - -
Acco08g2057 704 SUPERFAMILY Ankyrin repeat 6 151 IPR036770 -
Acco08g2057 704 PANTHER UNKEMPT FAMILY MEMBER 17 655 IPR045234 -
Acco08g2057 704 MobiDBLite consensus disorder prediction 176 205 - -
Acco08g2057 704 MobiDBLite consensus disorder prediction 559 591 - -
Acco08g2057 704 Pfam CCCH-type zinc finger 282 302 IPR041367 -
Acco08g2057 704 MobiDBLite consensus disorder prediction 545 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2057 Acco-ChrAcco08 35114474 35116588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2057 9 701 C2H2 Transcription Factor Family AT5G12850 55.728 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g2057 Ank_2 1.3e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g2057 08 35114474 35116588 Acco08g2057 08 35114474 35116588 ECH