Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g2048 ATGTCTCTCTTAAGGTTGCAGACAGAGAGGCAGAGAGAGAATGGGGGTTCTCATTTCAATGTAATTGAAGCTCTAAATCCTGAAATCTTCTGCGTCTTTTTCTGCTGCTTCGCAACCTGGAGTAAGGAAAACTTGGCAAGGATGCCAGGAAAACCTGATGTGGAAGATAGGAGGTATGAAACAGGAGGAGGGCAGATTCAGTTTCAATCAGGAATTTACTCTCAACCATGGTGGCGTGGTGTTGAGGAAAATGCCTCTAAATCATCATCTTCAGTGTATCAGATAAGTGGTTCAGTGATGAATTCACCAGTTAAGGAAGGATCAGATAAAGTTGGTTTTCATAAGCAGACGCAGCCTATGGTTTCATCTTCACTTTCTCCAGTTGGTGGGAATGCCAACAAAGGGCACCAAAATAACAAATATGTTATGTCGTCTGCACCACATGCCATGGGCAAACACCTTGGTTCAAATTCCCAAGCCGAACTTGTCAGTCATTCCATTGTTTTAACCTCTTACCCTTACTCAGATGCACAGTATGCTGGAATCTTGACATCTCATGGGCCTCAAAATATGATAAATCCTCAGTTGTATGGAATGCACCATGCTAGAATGCCTTTGCCACTTGAGATGGAAGAAGAGCCTGTTTATGTCAATGCAAAGCAGTACCATGGTATCTTAAGGCGGAGGCAGTCACGTGCTAAGGCCGAGCTTGAAAGGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCTCGCCACCTACATGCTATGAGAAGGGCAAGGGGGTGTGGGGGCCGCTTTCTGAATACAAAGAAGCTTGAAAGTAATAATTCTAATGAACATGCATAA 852 0.4319 MSLLRLQTERQRENGGSHFNVIEALNPEIFCVFFCCFATWSKENLARMPGKPDVEDRRYETGGGQIQFQSGIYSQPWWRGVEENASKSSSSVYQISGSVMNSPVKEGSDKVGFHKQTQPMVSSSLSPVGGNANKGHQNNKYVMSSAPHAMGKHLGSNSQAELVSHSIVLTSYPYSDAQYAGILTSHGPQNMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLESNNSNEHA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g2048 283 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 87 280 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 PRINTS CCAAT-binding transcription factor subunit B signature 214 236 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 PRINTS CCAAT-binding transcription factor subunit B signature 245 268 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 ProSiteProfiles NF-YA/HAP2 family profile. 211 271 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 SMART cbf3 210 271 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 213 268 IPR001289 GO:0003700|GO:0006355
Acco08g2048 283 Gene3D - 211 272 - -
Acco08g2048 283 ProSitePatterns NF-YA/HAP2 subunit signature. 216 236 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g2048 Acco-ChrAcco08 34987694 34991414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g2048 69 276 CCAAT-HAP2 Transcription Factor Family AT5G12840 42.857 2.12e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco08g2048 CBFB_NFYA 2.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g2048 08 34987694 34991414 Acco08g2048 08 34987694 34991414 ECH