Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1997 ATGGCGTGCATAAAAGGGGTCAATCGATCGGCGTCCGTGGCCCTGGCCCCGGACGCACCGTACATGGCGGCCGGAACCATGGCGGGGGCAGTTGATCTGTCCTTTAGCTCCTCCGCTAATCTGGAAATATTTAATCTTGATTTCCAGTCCGATGATCAGGAACTGCCCTTGGTCGCGGAGTGCACGAGCTCCGAGCGGTTCAATCGTCTGTCTTGGGGAAAGAGTAGTTCTGCCTCTGAAGATTTCTCCCTTGGGCTCATTGCGGGGGGGCTGGTCGATGGCAATATTGGCCTCTGGAATCCTCTCACTCTGATCCGTTCGGAGGCAAAAGAAAGTGCTTTTCTTCAACATCTTGTGAGGCATAAAGGGCCAGTCCGTGGTCTCGAGTTTAATACCATTTCTCCAAATCTTCTTGCATCTGGGGCTGAGGATGGCGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCATCCCATTTTCCACCTATCAGGGGTAGTGGCTCTGCTTCCCAGGGTGAAATTTCATTCTTATCTTGGAATAGCAAAGTCCAACACATATTAGCATCAACTTCACTCAATGGGACTACTGTGGTCTGGGACCTAAGGAAGCAAAAGCCAGTGATAAGCTTTGCAGACTCAGTTAGAAGGCGATGTTCAGTTTTGCAGTGGAATCCTGATTTTGCCACTGAGCTAGTTGTTGCATCAGATGAGGATGGTTCTCCTGCTGTGAGGCTTTGGGATATGAGGAATATAATGACACCAATTAAAGAGTTTGTGGGACACAGTAGAGGTGTAATTGCCATGTCATGGTGTCCCTATGATAGCTATTATCTGCTCACCTGTGCCAAAGATAGTCGAACCATATGCTGGGACACAACTTCTGGAGAGGTGGTCTTTAACCTTCTGTTCTCACCTGCAAGTTTGAAAATTTTACGTGAATTGCCTGCTGGGACCAACTGGAATTTCGATGTGCATTGGTATCCTAAAATACCTGGAGTGATTTCAGCTTCTTCCTTTGACGGAAAAATTGGCATCTACAATGTTGAGGGTTGCAGTCGCTATGGTGCTGGACAAAATGATTCTGGTGCGGTATCTCTAAGAGCTCCAAAATGGTATAAACGCCCAGTTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCATTTAATACCAAGTCATCTGCCGCAAATGCCCCTGCTGGATCTTCAGAGGTTTATGTGCATAATATGGTTACTGAACATACTCTATTGAGTCGTTCCTCTGAATTTGAAGCTGCAATACATAATGGGGAAAGGTCTTTGCTGAGGGTTGTATGTGACAAAAAGTCTCAGGAATCAGAATCTGATGAAGAAAGAGAAACATGGGGCTTCTTAAAGGTTATGTTTGAAGATGATGGGTCAGCAAGAACGAAGCTGCTTGAACACCTTGGTTTTACTGTATCTGTTGAAGAAAAAGACACAACTTTAGATGATCTTGCACAAGAAGTCAGTGCTATTGGACTTGATGAGGCAGCTGTTGGTAAAGTAGGACTTGGGCCTTCTAATGAATCTACTGCTTTCCCAGATACTGGGGAGGATTTCTTTAACAATCTTCCTAGTCCTAAAGCTGAGACACCTTTATCTACTTCTGGTGGTAATGTGGATTATGCCAATGGTTTGGACAAAACTGAAGAAGAGTTGGAAGTGGAGGAGAGCAATGATCCTACATTTGATGATAGTGTTCAGCGTGCATTAGTTGTTGGGGACTACAAAGGGGCAGTTACACAATGCATATCTGCAAATAAGTGGGCTGATGCGCTAGTTATTGCTCATGTAGGTAGTGATTCACTATGGGAAAGTACACGAGACCAATACCTTAAGAAAATCAGATCACCATACTTGAAGATTGTCTCTGCGATGGTGAGCAAGGATCTCTTAAGCCTTGTGAACACCAGGCCTCTAAAATTTTGGAAAGAGACTCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACTATGCTTTGTGACACACTTGCTTCAAAACTCATGGGAGCTGGAAATACATTAGCTGCAACTCTCTGTTATATATGTGCTGGCAATATCGATAAAACAGTTGAAATTTGGTCAAAAAATCTGCAGATTGAGCATGAAGGAAAATCGTATGTTGATGTTCTCCAGGATTTGATGGAAAAAACTATTGTTCTTGCCTTAGCAACTGGGCAGAAGCAATTTAGTGCATCTCTTTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCGAGTCAAGGACTGTTGACTACTGCGATGGAGTATATTAAGCTCTTGGGTTCTGCTGAACTGTCACCTGAACTTCTAGTCCTAAAAGATCGGATTTCTCTTTCTACACAACCTGAGAAAGAAGTTCAGACTACTGAGCTTGAAAATACTCAGCCACAGAGTGGATCATTTTACAGCGCTGATAATTCCAATTACAGTAGAAATTATTATCAGGAGTCAGTTTCACCACAAGTACAGCATGGTGCTTCTGGAATTCCGTATGATGAAAGCTATCAACAGCCGTTTGATCCTTCATATGGAAGAGGGTACGCTGGTTCTGCTCCATTTCAGCAACCTCAACAACCTAATATGTTTGTTCCATCACAGGCACCTCAGGTTCACCAAGCCCCTCAGCCAAACTTCTCTGCTGCTCCAGTTACACAACCTCCTATGAGATCTTTTGTTCCTCACACTCCTCCAGCGCTAAGAAATGTTGAACAATATCAGCAGCCGACATTGGGTTCTCAGTTGTATCCTGCAGCTACCAATCCACCTTACCAACCCACACCCCCTGCCACATCCCAAATGGGTTTGGTTCATGGCCAGAAGTTGCCACAGGCTGTGGTGCCAACCCCAAATCCTAGGGGATTCGCCCCAGTCTCCGGTTCTGGTGTTGCACAAAGACCTGGCATTGGATCGATGCAGCCTCCTGGTCCCCCTCAAGCGGCTCCTGCAAAGCCAGCTCCAGCACCAGCTGCTCCACCTCCAACTGTGCAAACAGCTGATACTTCAAATGTGCCTGTGCACCATAAGCCCATTGTCACAACATTGACAAGGCTTTTCAACGAGACATCAGAAGCGCTGGGAGGTGCACGTGCGAATCCAGCCAAAAAGCGGGAGATAGAAGACAACTCAAAGAAAATTGGAGGATTATTTGCAAAATTGAACTTTGGGGACATCTCTAAAAATGCCGCAGACAAGCTCCTTCAGCTGTGTCAGGCATTAGACAATGGCGATTTCAGTACAGCCCTACAAATTCAGGTATTGCTTACCACAACCGAATGGGATGAATGCCAGTCCTGGCTCGGTTCGCTGAAGCGAATGATCAAGACAAGGCAGAGTGTGAGATAA 3375 0.4533 MACIKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFNLDFQSDDQELPLVAECTSSERFNRLSWGKSSSASEDFSLGLIAGGLVDGNIGLWNPLTLIRSEAKESAFLQHLVRHKGPVRGLEFNTISPNLLASGAEDGEICIWDLANPSEPSHFPPIRGSGSASQGEISFLSWNSKVQHILASTSLNGTTVVWDLRKQKPVISFADSVRRRCSVLQWNPDFATELVVASDEDGSPAVRLWDMRNIMTPIKEFVGHSRGVIAMSWCPYDSYYLLTCAKDSRTICWDTTSGEVVFNLLFSPASLKILRELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNVEGCSRYGAGQNDSGAVSLRAPKWYKRPVGVSFGFGGKLVSFNTKSSAANAPAGSSEVYVHNMVTEHTLLSRSSEFEAAIHNGERSLLRVVCDKKSQESESDEERETWGFLKVMFEDDGSARTKLLEHLGFTVSVEEKDTTLDDLAQEVSAIGLDEAAVGKVGLGPSNESTAFPDTGEDFFNNLPSPKAETPLSTSGGNVDYANGLDKTEEELEVEESNDPTFDDSVQRALVVGDYKGAVTQCISANKWADALVIAHVGSDSLWESTRDQYLKKIRSPYLKIVSAMVSKDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSKNLQIEHEGKSYVDVLQDLMEKTIVLALATGQKQFSASLCKLVEKYAEILASQGLLTTAMEYIKLLGSAELSPELLVLKDRISLSTQPEKEVQTTELENTQPQSGSFYSADNSNYSRNYYQESVSPQVQHGASGIPYDESYQQPFDPSYGRGYAGSAPFQQPQQPNMFVPSQAPQVHQAPQPNFSAAPVTQPPMRSFVPHTPPALRNVEQYQQPTLGSQLYPAATNPPYQPTPPATSQMGLVHGQKLPQAVVPTPNPRGFAPVSGSGVAQRPGIGSMQPPGPPQAAPAKPAPAPAAPPPTVQTADTSNVPVHHKPIVTTLTRLFNETSEALGGARANPAKKREIEDNSKKIGGLFAKLNFGDISKNAADKLLQLCQALDNGDFSTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVR 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1997 1124 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Acco08g1997 1124 MobiDBLite consensus disorder prediction 981 1004 - -
Acco08g1997 1124 FunFam Protein transport protein SEC31 homolog B 366 791 - -
Acco08g1997 1124 SUPERFAMILY WD40 repeat-like 12 350 IPR036322 GO:0005515
Acco08g1997 1124 MobiDBLite consensus disorder prediction 966 1012 - -
Acco08g1997 1124 Pfam Sec23-binding domain of Sec16 575 773 IPR024298 -
Acco08g1997 1124 SMART WD40_4 252 292 IPR001680 GO:0005515
Acco08g1997 1124 SMART WD40_4 111 151 IPR001680 GO:0005515
Acco08g1997 1124 SMART WD40_4 161 201 IPR001680 GO:0005515
Acco08g1997 1124 SMART WD40_4 54 100 IPR001680 GO:0005515
Acco08g1997 1124 SMART WD40_4 204 248 IPR001680 GO:0005515
Acco08g1997 1124 SMART WD40_4 308 348 IPR001680 GO:0005515
Acco08g1997 1124 Gene3D - 364 791 - -
Acco08g1997 1124 PANTHER SEC31-RELATED PROTEIN 3 1121 IPR040251 GO:0006888
Acco08g1997 1124 Gene3D Functional domain of the splicing factor Prp18 1012 1124 - -
Acco08g1997 1124 MobiDBLite consensus disorder prediction 792 817 - -
Acco08g1997 1124 Gene3D - 1 350 IPR015943 GO:0005515
Acco08g1997 1124 FunFam Protein transport protein SEC31 homolog B 1010 1124 - -
Acco08g1997 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Acco08g1997 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Acco08g1997 1124 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Acco08g1997 1124 MobiDBLite consensus disorder prediction 832 868 - -
Acco08g1997 1124 FunFam Protein transport protein SEC31 homolog B 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1997 Acco-ChrAcco08 34168233 34178377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1997 110 365 Miscellaneous Gene Families AT5G08390 21.875 3.31e-10 62.4