Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1980 ATGAAGTCCCACATTTCAAAATCCGAACTTTCTCCTTCATTATTACTCTCTGAAGGGTCAAGCTCTACCAGCAACGAAACTGAAGAAACCAATCCCTTTCCTCTCCAACACACAAAGCTTATTTCTAAACCCTTCTCATCACATCGCCCATTGGCCATTCTTTCTGGTCATATGGCCTCTGTTTCTTGTTTATCCCTTTCTGGAGACTTTATACTCAGTGCCTCTCAAAGCAAAGACATCATCGTATGGAAAAAACAAGATTTCAAGCTTCTTGACAAGTTCGGACATGGAGATGGATCGGTTAAATCCCTCGTCACGGCCGGTAACAAGATCTTCTCGGCTCATCAAGATGGCAAAATTAGAGTCTGGAAGGTTTCTAGTAGCTCATCAGAGAATAATATGTTCAAGCTTGTGGAAACTCTCCCGACAACAAAGGATTATTTGGGCAAATTCATGAAACAGAGTAATTATGTCCAAACAAGAAGACACCACAAGAGATTGTGGATTGAGCATTCAGATAGCATATCATGCTTGACGGTCTCTAATGGTTTCATCTATTCTGGTTCATGGGACAAGACCCTTAAGGTATGGAATTTATCAAGCTTCAAGTGTTTAGAATCCATTAAAGCTCATGATGATGCCATCAATGGCTTAGTAGCATGTAAAGGGGTTGTGTATTCTTCTTCTGCAGATGGAAAAATCAAAGCTTGGGGAAGAAAAGAGGGAAACAAGAAGAACAAGAAAATCTCACATTGTTTGAAAGGGGTTTTAAAGAGTCATCATAAAGATTCATCCTTTAATTGTGTTCTTGTTTCTCAAGATGGGAAATGGGTATATGGAGGAGATTCTAATGGTTTCATAACAGAATGGGAGAAAATCAACTTTCAAACCAACTCTGATACGATGATGAACCAATATCTTGACCGGTTCAATGAATCATGGAAGCTTGTAAGTGAGACAAGAGCACATGAAATGGCTGTTTTGTGCATGTGTCTAAAGGGGCAGATTTTGTTAAGTGGGTCTTCAGATAAGAGTATAGGAATTTGGAAGAGAGAGGGATTTAATGGCGAGCTTTGTAAAATTGGGGTAATAAATGGACATGAAGGGCCAGTGAAGTGTTTAGAGGCATCTTGTAGAAATACAAGTGATGGTGGTTTTTTGCTTTATAGTGGAAGCATGGACAAAGGCTTAAGAGTTTGGTGGGTTTCTATGTACAATGAGGATACAGAGGACAATTCTAGCGTCTATTGCATCAAGAACAGTGAATGA 1269 0.3948 MKSHISKSELSPSLLLSEGSSSTSNETEETNPFPLQHTKLISKPFSSHRPLAILSGHMASVSCLSLSGDFILSASQSKDIIVWKKQDFKLLDKFGHGDGSVKSLVTAGNKIFSAHQDGKIRVWKVSSSSSENNMFKLVETLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHSDSISCLTVSNGFIYSGSWDKTLKVWNLSSFKCLESIKAHDDAINGLVACKGVVYSSSADGKIKAWGRKEGNKKNKKISHCLKGVLKSHHKDSSFNCVLVSQDGKWVYGGDSNGFITEWEKINFQTNSDTMMNQYLDRFNESWKLVSETRAHEMAVLCMCLKGQILLSGSSDKSIGIWKREGFNGELCKIGVINGHEGPVKCLEASCRNTSDGGFLLYSGSMDKGLRVWWVSMYNEDTEDNSSVYCIKNSE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1980 422 SMART WD40_4 357 401 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 201 238 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 161 198 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 250 291 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 47 84 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 87 124 IPR001680 GO:0005515
Acco08g1980 422 SMART WD40_4 313 350 IPR001680 GO:0005515
Acco08g1980 422 ProSitePatterns Trp-Asp (WD) repeats signature. 185 199 IPR019775 -
Acco08g1980 422 SUPERFAMILY WD40 repeat-like 47 400 IPR036322 GO:0005515
Acco08g1980 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 207 IPR001680 GO:0005515
Acco08g1980 422 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Acco08g1980 422 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Acco08g1980 422 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Acco08g1980 422 Gene3D - 146 246 IPR015943 GO:0005515
Acco08g1980 422 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 404 IPR045182 -
Acco08g1980 422 MobiDBLite consensus disorder prediction 1 34 - -
Acco08g1980 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Acco08g1980 422 Gene3D - 38 145 IPR015943 GO:0005515
Acco08g1980 422 Pfam WD domain, G-beta repeat 361 400 IPR001680 GO:0005515
Acco08g1980 422 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Acco08g1980 422 Pfam WD domain, G-beta repeat 93 124 IPR001680 GO:0005515
Acco08g1980 422 Pfam WD domain, G-beta repeat 169 198 IPR001680 GO:0005515
Acco08g1980 422 FunFam BnaA09g28200D protein 158 242 - -
Acco08g1980 422 Gene3D - 247 422 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1980 Acco-ChrAcco08 33946841 33948109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1980 158 405 Miscellaneous Gene Families AT5G08390 21.839 2.13e-06 48.1