Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1954 ATGAATAATTCAACAATCGCACCATGGAAGTATCATGTTTTCTTGAGCTTCAGAGGAGAAGACACCCGAAAAGGCTTCACAGACCACTTACACGCTGCTCTAGAACAAAGAGGTATCATAACTTTCTTAGATGATAAGCTCAACAGAGGAGAGGTTATTTCTGATCAACTTCTACAAGCAATTGATGAATCTCTCATCTCTCTTGTTATTATCTCTGAAAGTTATGCTTCTTCTAGTTGGTCTTTGGATGAACTTCAAAGGATTCTTGAATCTAAAAAAACTTTGGGTAGAGAAGTTATCCCAATCTTTTATAAGATTAATCCATCTGATGTGCGTCATCAAAGAGGTAGCTTTGCTCGTGCCCTTCAAAAACATGGCGAGAGATTTGCTAACAACAAAGAGAAGGTGCAAAGATGGAAAGATGCCTTAAAAGAAGTTGCAAATATATCTGGCTATGATTCTACATACCAGCATGAAGCAAAACTCATTGAAGAAATTACAGCAGAAGTCTGGGCGAAGGCTAAATTGTTAAACAACTATGAATCTCTCCAACTCTTTTGTAAGAAGGCTTTCAAAATGGATAAACCTATAGATGGTTATTCGAAATTGTTTGAAGACATCATCCACGAAGCTCATGGCCTTCCCTTAACTATTGAAGTGTTGGGTTCTTATTTTTGTGGGAGAAGTGAACTTGAATGGAAAGAAGCTTTGGAAAAAATCAAGAAGTCTCTGCCAAGCAATATTCTAAAGAGACTTAGAATAAGTTATGATGCATTAAGTGATTCAGAAAAGAAAATGTTTTTAGATATTGCTTGTTGTTTTAAGGGAATGATCAAAGACCAAGTGACACAAATATTTGAAATATGTGGTGATCTTTATCCAACACTTGGAATAAGAGAACTTGTTGAGAAATGCTTGTTAACAGAATTTCATAGTAATAATGGTGCATGTCATTTGGGTATGCATGACATCCTTCAAAAGATGGGCAGAAGTATTGTTCTAGAGGAATCACCAAATGATGCTGGGAGACGTAGTAGGTTATGGTCTTTGGAAGATATTGATAATATGATGTCAAAAAACAAAGGCACTAATTTGATACAAGCTATACATCTTCAGTCACCTATGCCATATGAGGCGAATTGGGACCCTGAAGCATTCTCTGCGATGCGTAGCCTCTCAATACTCATTATATCATGTTATGTGTACTTTCCTCGAGGTCTAAAACTTCTTCCTAGTTCAATAAAAGTTCTTGACTGGAAAGCATATCCTTTGAAATCTTTGCCCTTTGGTGCTCATCTTGACAAACTTGTGCTCCTTAAAATGCATCATAGCAAGATCAGACAACTTTGGGGGAGAACACAAGCATCACAAGATGAATTCTTCAAAAAGGAATTGTGGTGGAGAATGGCTATGGGGAACAATGCCAATCAAATGTTACTGATTCATTCATTCAGTAGCAACTTCACAGCTAATGATGGCGAGATTGAATTTATATTTTACACACAAAAATATAAGTGTATAGAGAAAGTACAATGGGAAGGGGGAGTTCATTTGCAAAGTCGGACTAAGTTTGTGATAACCAGGTGTGGGTGGCGTGTGATAACCGAGGAAGATGTTGAAAAATGGCGCAGATCAATGAATGCATGCAGTATAAGTGGTAACAGTGAAATCCCTTCCCACCATTCTCTTATTTCTTTTGGACAGAGATCCTGCCAAGTTGAAGAATTGGGAGAAGAAAACTACATTGTGACTAATAAGGAAGCGGAAACATTTTCCGCTAAACGAAGAAAAATCTACATGCAAAGCTACATAATGCAAACATTAAAGGTGCTTGTCTTCAAAAAGTTGAATGATGTAAGACTAATAATTCAGCCATGCCTTTGCTCCATCACTGCTTCACAGAAGCTCCTTGAAGTGTCGTACGTGGAAGAGATGGATGATGATGCAGAATCAATGGAGAAAGAAGTGAAGAGAATCGAGGAGAGCGATCATGAGAGAGACGGAAATCTGAGAATCTAG 2019 0.3769 MNNSTIAPWKYHVFLSFRGEDTRKGFTDHLHAALEQRGIITFLDDKLNRGEVISDQLLQAIDESLISLVIISESYASSSWSLDELQRILESKKTLGREVIPIFYKINPSDVRHQRGSFARALQKHGERFANNKEKVQRWKDALKEVANISGYDSTYQHEAKLIEEITAEVWAKAKLLNNYESLQLFCKKAFKMDKPIDGYSKLFEDIIHEAHGLPLTIEVLGSYFCGRSELEWKEALEKIKKSLPSNILKRLRISYDALSDSEKKMFLDIACCFKGMIKDQVTQIFEICGDLYPTLGIRELVEKCLLTEFHSNNGACHLGMHDILQKMGRSIVLEESPNDAGRRSRLWSLEDIDNMMSKNKGTNLIQAIHLQSPMPYEANWDPEAFSAMRSLSILIISCYVYFPRGLKLLPSSIKVLDWKAYPLKSLPFGAHLDKLVLLKMHHSKIRQLWGRTQASQDEFFKKELWWRMAMGNNANQMLLIHSFSSNFTANDGEIEFIFYTQKYKCIEKVQWEGGVHLQSRTKFVITRCGWRVITEEDVEKWRRSMNACSISGNSEIPSHHSLISFGQRSCQVEELGEENYIVTNKEAETFSAKRRKIYMQSYIMQTLKVLVFKKLNDVRLIIQPCLCSITASQKLLEVSYVEEMDDDAESMEKEVKRIEESDHERDGNLRI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1954 672 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 177 583 IPR044974 GO:0006952
Acco08g1954 672 Gene3D - 178 260 IPR042197 -
Acco08g1954 672 MobiDBLite consensus disorder prediction 648 672 - -
Acco08g1954 672 MobiDBLite consensus disorder prediction 651 672 - -
Acco08g1954 672 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 176 - -
Acco08g1954 672 Coils Coil 642 662 - -
Acco08g1954 672 Gene3D - 7 177 IPR035897 -
Acco08g1954 672 SMART till_3 10 149 IPR000157 GO:0007165
Acco08g1954 672 Pfam TIR domain 10 179 IPR000157 GO:0007165
Acco08g1954 672 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Acco08g1954 672 SUPERFAMILY "Winged helix" DNA-binding domain 247 356 IPR036390 -
Acco08g1954 672 ProSiteProfiles TIR domain profile. 9 174 IPR000157 GO:0007165
Acco08g1954 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 270 IPR027417 -
Acco08g1954 672 Pfam NB-ARC domain 171 246 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1954 Acco-ChrAcco08 33501406 33508234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1954 200 455 WRKY Transcription Factor Family AT4G12020 32.955 3.23e-30 125