Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1937 ATGAGCCACGGGCTCATCTCTACCAACTTCCCTCCCATATTTGTCCTTCTGTTCTCTCTTCACGACCCTCTTCAATGGCCTTTTGATCAAGCCATCATTTTAGGACTGGTGGTTTCTTGTACTAGCATGGCTTCTAGCAATGCTTTCTTTGATGATATACGGAGCAAATCTGAGGTTGATCCTCCTTCAAATGAAGAGCCAATGGATATCAGTGAGCTAGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACGAGCAGTGTTCATGAGCTTTTAGAGTGCCCCGTGTGCTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCACAATCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCGTTGGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCATATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCTCTGTCATCGGTGATATTCCTTTTCTGGTGGCCCATTTGAAAGATGATCACAAGGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCATTTCAGCTAGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGGGATGATAATGAGGCGAAGAACTATAGCTACAGTCTTGAGGTTGGTGGTAATGGGAGGAAGATGACTTGGCAGGGCGTGCCTAGAAGCGTCAGGGACAGCCACCGTAAGGTTCGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACATGGCTCTCTTCTTTTCTGGGGGAGACAGGAAGGAATTGAAGCTTAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 1041 0.4486 MSHGLISTNFPPIFVLLFSLHDPLQWPFDQAIILGLVVSCTSMASSNAFFDDIRSKSEVDPPSNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSVRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1937 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 207 339 IPR008974 GO:0005515
Acco08g1937 346 Pfam Seven in absentia protein family 140 339 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco08g1937 346 CDD RING-HC_SIAHs 96 134 - -
Acco08g1937 346 CDD Sina 212 340 - -
Acco08g1937 346 ProSiteProfiles Zinc finger RING-type profile. 98 134 IPR001841 -
Acco08g1937 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 56 149 - -
Acco08g1937 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 81 345 - -
Acco08g1937 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 150 IPR013083 -
Acco08g1937 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 206 IPR013083 -
Acco08g1937 346 ProSiteProfiles Zinc finger SIAH-type profile. 151 211 IPR013010 GO:0008270
Acco08g1937 346 SUPERFAMILY RING/U-box 92 139 - -
Acco08g1937 346 SUPERFAMILY TRAF domain-like 151 343 - -
Acco08g1937 346 FunFam E3 ubiquitin-protein ligase SINAT3 150 206 - -
Acco08g1937 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 207 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1937 Acco-ChrAcco08 33306899 33313938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1937 89 346 C3H Transcription Factor Family AT2G41980 79.070 1.94e-160 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1937 08 33306899 33313938 Acco08g1937 08 33306899 33313938 ECH