Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1918 ATGGTTTTTCTTCAAAATCCTTCCCTGTTCATCCTAAGCCTATGCGGGATTGTTGTAAAGGGTCATTGGAGTAATCTGTTGAAGCTGGGAAAGGCTTCTGCTCTCACTTCTTCCACCATTCACCAGGTACTTCTGCAACTATCTCTCCATGGCTCTGCTCCATCTTATTCCTTCTCATTCTTCAACTGGGTCGAGACAATTCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTTCATATCCTCGTAAAGCATAAGCATTTTAGAACTGCACAAGTGATGCTTGAGAAAATTGCCCACAGGGATTTTCTTTCGTCACCATCAGTTTTGAGAACTTTGATCGAAATTCAACATGACCCTGAAGTGAATTCACATGTATTGAGCTGGCTTGTAATACATTTTGCAAAATCAAAGATGACTGATGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAATTTGAACCCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCTTTGGTCAAGGATGGGGTTACTAACATGGTATGGAAGGTTTACAAACAAATGGTAAAAGCTAGTGTTTTTCCTAATATGCATATCTATAATGTATTAATCCATGCTTGTTCCAAGTCAGGAGATGTAGAGAGGGCAGAAAATATACTGAATGAGATGGAAGTGAAGGGTGTGTATCCTGATATTTTCACTTACAATACTTTGATATCATTATATTGCAAGAGAAGTATGCACTACGAGGCTTTATCTATCCAGGAAAGAATGGAAAGAGAAGGAATAAATCTTGACATTGTTAGTTACAATTCTCTTATATATGGATTTTGTAGAGAGGGTAGGATGAGAGAAGCCATGAGGATATTCAGCAACATCAAAGGTGCAATTCCCAACACTATTACATACACTACATTGATTGATGGGTATTGTAAATCAAATGACCTGAAGCAAGCTCTGAAAATGTGTGAAATGATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGTTGTGTCAGGATGGCAGAATAAGAGAGGCGAATAAACTCTTGATTGAGATGAGTGAAAGAAAAATTCAGCCTGATAATGTCACATGTAACACATTGATTAATGCTTATTGCAAGATAGGAGATCTGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGATTGAAACCTGACCCATTTACGTATAAAGCATTGATTCATGGGTTTTGCAAGATAAAAGAGCTGGAAAGAGCCAAGGAGATGTTGTTTTCCATGCTTGATGCTGGGTTTTTGCCCAATTATTGCACATATTCATGGATCGTAGATGGTTACTGTAATAAAGACAATGAAGATGCAATTGTTACACTCCCTGATGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAGTTAGAAAGGATCCCATGTGCTTTGAAGTTGTTTAATCTTATGGAAGGGAGGGGTATATCAGGTGACAGCGTTGTCTACACAAGTCTTGCTTATGCTTATTGGAAATTAGGGAACGCAAAGTTTGCATCAAATATATCAGAAGAGATGACCAGAAAGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTAATCCTGTTGGTAGTGAAAACGAAACTTCATGTTCCTTCTGGAATCATGTAGTGGAAAGGGGCCTTATGTCAAGAAATACAATGAATAAAATAAAGCAAATGGAATTATGA 1764 0.3724 MVFLQNPSLFILSLCGIVVKGHWSNLLKLGKASALTSSTIHQVLLQLSLHGSAPSYSFSFFNWVETIPNYKHSLQCSWSMLHILVKHKHFRTAQVMLEKIAHRDFLSSPSVLRTLIEIQHDPEVNSHVLSWLVIHFAKSKMTDDAIQVFEQMRLYNLNPHLHACTVLLNSLVKDGVTNMVWKVYKQMVKASVFPNMHIYNVLIHACSKSGDVERAENILNEMEVKGVYPDIFTYNTLISLYCKRSMHYEALSIQERMEREGINLDIVSYNSLIYGFCREGRMREAMRIFSNIKGAIPNTITYTTLIDGYCKSNDLKQALKMCEMMQAKGLYPGVVTYNSILRKLCQDGRIREANKLLIEMSERKIQPDNVTCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKIKELERAKEMLFSMLDAGFLPNYCTYSWIVDGYCNKDNEDAIVTLPDEFLRRGLCIDVSIYRALIRRLCKLERIPCALKLFNLMEGRGISGDSVVYTSLAYAYWKLGNAKFASNISEEMTRKRLMITSKIYKCFGNPVGSENETSCSFWNHVVERGLMSRNTMNKIKQMEL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1918 587 NCBIfam pentatricopeptide repeat 232 265 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 476 508 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 267 291 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 198 231 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 163 195 IPR002885 -
Acco08g1918 587 NCBIfam pentatricopeptide repeat 300 333 IPR002885 -
Acco08g1918 587 SUPERFAMILY HCP-like 304 457 - -
Acco08g1918 587 Pfam Pentacotripeptide-repeat region of PRORP 137 292 IPR033443 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Acco08g1918 587 Gene3D Tetratricopeptide repeat domain 23 192 IPR011990 GO:0005515
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Acco08g1918 587 Pfam PPR repeat family 297 346 IPR002885 -
Acco08g1918 587 Pfam PPR repeat family 367 416 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Acco08g1918 587 Gene3D Tetratricopeptide repeat domain 294 366 IPR011990 GO:0005515
Acco08g1918 587 Gene3D Tetratricopeptide repeat domain 462 561 IPR011990 GO:0005515
Acco08g1918 587 Gene3D Tetratricopeptide repeat domain 367 461 IPR011990 GO:0005515
Acco08g1918 587 Gene3D Tetratricopeptide repeat domain 208 293 IPR011990 GO:0005515
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Acco08g1918 587 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 59 391 - -
Acco08g1918 587 Pfam PPR repeat 476 505 IPR002885 -
Acco08g1918 587 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1918 Acco-ChrAcco08 32652837 32654600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1918 115 552 Glycosyltransferase AT1G05670 31.066 2.52e-67 231