Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1913 ATGCCGAAGAAGAAGAAGCATGGCAACAGCGACAGTGATGAAGAAGACATCTTCTATTACCGCTACGCTTCCTCTTCTGCACCTTCCTCAAACTCCACCAGAACCCTCAAGACTCACGGTGGCTCTGGTGGATTAGCTCCCTCTAAATCCACTCTCTATGTCTCCAACCTTGACTTCTCCCTCACTAACTCTGACCTCAACACCCTCTTCTCCACCTTTGGAAAGATTGCACGAGTCACCATTCTCAAGGACCGTGTCACTCGCCAGAGCCGTGGCGTGGCTTTCATCCAATATGTTTCTCGTGATGATGCACAAAAAGCTGCACATGAGATGAACCACAAAATCCTCAATGGTAGGACCTTGACTGCTTCCATCGCTGCTGATAATGGGCGAGCCCCAGAATTTATAAAGAAAAGGGTTTACAAGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGTCATTTGTCTTATGAATGTCCCAAGAATCAATTGGGGCCCAGGGAGCGTCCGGCTCCCAAGCGTGAACGACGTAGCGGCGGGTACCAGCGGACCGAAGAGGATGATGACGGACCTGATGGTGGGGATCAGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGTGGATGAAAGGTTGCTGGCTGGTAATGAGAAGGTTGTGGAGAAGAAGAAGGCAAAGAAAGCAAGCTATTTCAGTGACGAGAGTGGTGATGAAGATGATTGA 732 0.4904 MPKKKKHGNSDSDEEDIFYYRYASSSAPSSNSTRTLKTHGGSGGLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTILKDRVTRQSRGVAFIQYVSRDDAQKAAHEMNHKILNGRTLTASIAADNGRAPEFIKKRVYKDKSRCYECGEGGHLSYECPKNQLGPRERPAPKRERRSGGYQRTEEDDDGPDGGDQFEDDNWASIVDNGVDERLLAGNEKVVEKKKAKKASYFSDESGDEDD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1913 243 MobiDBLite consensus disorder prediction 168 188 - -
Acco08g1913 243 SMART rrm2_1 51 124 IPR003954 GO:0003676
Acco08g1913 243 SMART rrm1_1 51 124 IPR000504 GO:0003723
Acco08g1913 243 SUPERFAMILY RNA-binding domain, RBD 47 132 IPR035979 GO:0003676
Acco08g1913 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Acco08g1913 243 MobiDBLite consensus disorder prediction 158 243 - -
Acco08g1913 243 CDD RRM_ZCRB1 49 124 IPR034219 -
Acco08g1913 243 Gene3D - 2 134 IPR012677 -
Acco08g1913 243 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 242 IPR044598 GO:0000398|GO:0005689
Acco08g1913 243 Gene3D - 137 178 - -
Acco08g1913 243 SUPERFAMILY Retrovirus zinc finger-like domains 132 163 IPR036875 GO:0003676|GO:0008270
Acco08g1913 243 MobiDBLite consensus disorder prediction 214 236 - -
Acco08g1913 243 ProSiteProfiles Zinc finger CCHC-type profile. 146 162 IPR001878 GO:0003676|GO:0008270
Acco08g1913 243 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Acco08g1913 243 MobiDBLite consensus disorder prediction 25 45 - -
Acco08g1913 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Acco08g1913 243 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Acco08g1913 243 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 2 134 - -
Acco08g1913 243 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 137 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1913 Acco-ChrAcco08 32574026 32574757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1913 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 29.870 3.96e-07 48.5