Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1910 ATGGGAAAAGGCCAGATGTGGGGTCCATCCGGTCACCCTGGACTAACTAGGCTTTCCGTGAGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCAATTAGCTGCCTCAGCTAACAGACCACTGGTCCATGGTGAAAATGGTGACCCTGCTGACTGTCGATTCTCTGAATTCTGCAAGAATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACCAAACACCTTCTACAGACCAATGCATCATCTATCGGGAATGGAACACATGAAGAAGCAGAACGGTATTGGTTTTCGTTTGTCTTATACTGCATCAAGAGATTGGCTGACAAGCGTACAGACAGTGAGAAGAAAGTGACTGATAGCAATGGACTTACCCTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACGGATTGGGAAGGCAGGCTTCAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGCACTATAAACGTGCATTCAGGGAGTTCTTCTTGGCAAATGATACTATTGAAAAAAATTCTTCTGTTTCCATGACTGGTGACTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTCTGGCTCTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGCTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCTCGCTTCAGGAATTTTAACATTCATGACACATCACGCTTCGTTAAGAAAAGTATCAAAGGTGTGGACATCATTGCATCACTCTGCAACCGTTTCGAAACTTCAGAAGATGATGTGAGAATAAGTATGGAGAAGTCCAATAATTTAATCGCAGATATATTGAAGAAGAAGCCTTGTCCGGCATCTGAATGCGAAACTGAAACACTTATGAATATTGACAAAGATGGTTTGTTCTTCTTTAATGATCTTATGGAAGAATCATCTCTACCATGGTGTTTAAATATCTTGGAAAAAGATTATGAAGATGCCATTCATAACCAAGGTGAACTGGATGAGAGGCTGTTTATGAATGAGGAGGACAGCTTATTAGCTTCTGGAAGCTTGTCTGGAGGTTCAATGTCGGCAAGCGGTGTCAAGAGGAAAGCTGATCAAATGGCGTCACCTGCTAAGACAATTACAAGTCCACTCTCTCCTCAAAGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATCAGTGCAAATTCAAAGATGGCAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGCCCACTTCCATCAAAGCCTTCATCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGATGTCACAAGTGATGTAGTCCGGAGGGCACAGATTATATTGCAGGCTATATTTCCCAGTAGTCCTTTAGGAGATCGATGTTTAACTAGAAGCCTTCAAAGTGCAAGCCTCATGGACAATGTTTGGGCAGAGCAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGGGCAGAAGCCCAAGTACTGCATGCAATCAATTTAACCTCGTTATTAACTAATGAGAGGTTCCATAGATGCATGCTGGCATGTTCTGCAGAATTAGTTTTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAAGTAATAGAAAGCTTCATAAGACATGAAGACTCTCTCCCAAGAGAATTGAGGCGGCATCTAAATTCATTGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCTAGACCTTCCCTGTCTTCAGAAATAACTCGTCTCGGATTGTTAGCTGAACCAATGCCATCGTTAGATGCAATAGCAACGCATATTAACTTCTCTTGTGGGGGCCTGCCCCCTGGGCCTTCCTTACAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCACCAAAACGACTCTGCTCAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTCACTTCACCAGTGAAGGATCGACTTCTTCCCTTTAGTAACCTTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACTTGCGCAGAAACGGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATACGAGAGAACGTGTACTGCCTTTTTCAGCAAATACTAAACCAAAGGACGTCTCTTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACAGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGTGGGACAGCTACGAAAGCCAACCAGATACCTGAAGCCAGCAGTAACAATGATGGCCATTTAGGTCAGTGTCCTGGCTCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCTAAGAAAGTATCTGCATCACACAATGTATACGTGTCACCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATGACCGTTTGAATGGCACGCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGTGCGTCGTCGTCAGGAGCAACAGTGAAGTCTGAGCAGCCAGACAGCTGA 3156 0.4325 MGKGQMWGPSGHPGLTRLSVSPPAEEKMEDGKQLAASANRPLVHGENGDPADCRFSEFCKNGLSLDDESCRQAMKLFTETKHLLQTNASSIGNGTHEEAERYWFSFVLYCIKRLADKRTDSEKKVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWEGRLQAKELHANFLHLSILSKHYKRAFREFFLANDTIEKNSSVSMTGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDTSRFVKKSIKGVDIIASLCNRFETSEDDVRISMEKSNNLIADILKKKPCPASECETETLMNIDKDGLFFFNDLMEESSLPWCLNILEKDYEDAIHNQGELDERLFMNEEDSLLASGSLSGGSMSASGVKRKADQMASPAKTITSPLSPQSSPASHHANGIPISANSKMAATPVTTAMTTAKWLRTVICPLPSKPSSELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGDRCLTRSLQSASLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQVLHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETLPSQNGDIRSPKRLCSEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTATKANQIPEASSNNDGHLGQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINDRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQPDS 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1910 1051 Pfam Retinoblastoma-associated protein A domain 445 646 IPR002720 GO:0005634|GO:0051726
Acco08g1910 1051 Pfam Domain of unknown function (DUF3452) 124 262 IPR024599 -
Acco08g1910 1051 SMART RB_A_2 445 646 IPR002720 GO:0005634|GO:0051726
Acco08g1910 1051 MobiDBLite consensus disorder prediction 1 34 - -
Acco08g1910 1051 MobiDBLite consensus disorder prediction 411 434 - -
Acco08g1910 1051 FunFam Retinoblastoma-related protein 1 223 381 - -
Acco08g1910 1051 SUPERFAMILY Cyclin-like 453 648 IPR036915 -
Acco08g1910 1051 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 53 1049 IPR028309 GO:0006357|GO:0051726
Acco08g1910 1051 MobiDBLite consensus disorder prediction 684 704 - -
Acco08g1910 1051 FunFam Retinoblastoma-related protein 1 720 932 - -
Acco08g1910 1051 SMART DUF3452_2 117 262 IPR024599 -
Acco08g1910 1051 SUPERFAMILY Cyclin-like 767 939 IPR036915 -
Acco08g1910 1051 Gene3D - 733 921 - -
Acco08g1910 1051 Pfam Retinoblastoma-associated protein B domain 769 896 IPR002719 GO:0005634|GO:0051726
Acco08g1910 1051 CDD CYCLIN_AtRBR_like 769 900 - -
Acco08g1910 1051 Gene3D - 223 381 - -
Acco08g1910 1051 Gene3D - 448 636 - -
Acco08g1910 1051 MobiDBLite consensus disorder prediction 390 434 - -
Acco08g1910 1051 FunFam Retinoblastoma-related protein 1 448 636 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1910 47 1051 Core Cell Cycle Gene Families AT3G12280 70.206 0.0 1406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Acco08g1910 RB_A 7.9e-64 CL0065