Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1891 ATGTCTGAGATAAAGATGGATGAACTGGGGGAACTTGGAGAGAGGCCTATTTTCAGAGATATTAGACGCTATTACTGTGAATACTGTGGCATCTGTCGATCCAAAAAGACCCTGATAACCTCTCATATCCATTCTTGCCACAAGGAGGAGTTGGAAAGAATCAAAGCGCATAAAGATAATGAAATCAGGGACACAAAATCCAATACTTGCAAGGAATGTGGTGCTAGTTTCAAAAAACCAGCATATTTGGTGCAGCACATGCAAAGCCATTCTCTTGAGGAAAGATATTTATGCTATCAGAAATTTATGGATATTGTAGCTATCAAGAAGGGAGACCTCTTGAGAAGCTCCATCAAGGATGCCTCAGTCACGCTCTTTAAAGAGAGACCATATGTGTGTTCTATTGATGACTGTCAAGCAAGTTACCGAAGAAAGGATCACTTGACTCGCCACCTTCTGCAGCATGAAGGGAAAACTTTTAAATGTCCAATCAAGGATTGCAATCGTGACTTCGCTCTCCAAGGGAATATGACCAGGCATGTCAAAGCATTTCATAATGAGAATTCCTCCCCATCTAAAGTGGAAACGCAGAAGCAGTATGAATGCCCAGAAATCGGCTGTGGAAAGGTTTTCAAATTTGCTTCAATGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACTCAGTAGAGGTAGTCTGCTTGGATCCTGGTTGTATGAAGCATTTTACTAATGTCCTGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTGACCTGTGAGACTTGTGGGAAAAAGGAACTGAAGAAAAATATTAAGCGGCACCTCCGGTCGCATGAAACTAGTTCTTCATCAGAGGCATTTGAATGTGAACACAAGGATTGTAGCAGCACATTCACTACTAAATCCAATCTTGAAAAGCATGTAAAGGCTGTACATTTCAAAGAGAAGCCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGTAAGGGACAATCATGAAAAAACTGGGTTACATGTTTATACACATGGTGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGTGCAAGAGAAAGTGTCCTACATTTGAAATGTTGGTTAGGAAGAGAGTCACTCCTCCCAATCAATTGGAGCACATTTTGTTTGGAGAGGATACAGAGTAA 1203 0.4081 MSEIKMDELGELGERPIFRDIRRYYCEYCGICRSKKTLITSHIHSCHKEELERIKAHKDNEIRDTKSNTCKECGASFKKPAYLVQHMQSHSLEERYLCYQKFMDIVAIKKGDLLRSSIKDASVTLFKERPYVCSIDDCQASYRRKDHLTRHLLQHEGKTFKCPIKDCNRDFALQGNMTRHVKAFHNENSSPSKVETQKQYECPEIGCGKVFKFASMLQKHENCHVKLDSVEVVCLDPGCMKHFTNVLCLKAHVKTCHQFVTCETCGKKELKKNIKRHLRSHETSSSSEAFECEHKDCSSTFTTKSNLEKHVKAVHFKEKPFVCGFPDCGMRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGCKRKCPTFEMLVRKRVTPPNQLEHILFGEDTE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1891 400 SUPERFAMILY beta-beta-alpha zinc fingers 123 157 IPR036236 -
Acco08g1891 400 SUPERFAMILY beta-beta-alpha zinc fingers 158 186 IPR036236 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Acco08g1891 400 PANTHER ZINC FINGER PROTEIN 14 390 - -
Acco08g1891 400 Gene3D Classic Zinc Finger 124 155 - -
Acco08g1891 400 Gene3D Classic Zinc Finger 195 225 - -
Acco08g1891 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Acco08g1891 400 Gene3D Classic Zinc Finger 263 318 - -
Acco08g1891 400 Gene3D Classic Zinc Finger 156 194 - -
Acco08g1891 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 190 IPR013087 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 133 155 IPR013087 -
Acco08g1891 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 229 IPR013087 -
Acco08g1891 400 Coils Coil 48 68 - -
Acco08g1891 400 Pfam Zinc finger, C2H2 type 131 155 IPR013087 -
Acco08g1891 400 Pfam Zinc finger, C2H2 type 290 315 IPR013087 -
Acco08g1891 400 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Acco08g1891 400 Pfam Zinc finger, C2H2 type 200 221 IPR013087 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 162 185 IPR013087 -
Acco08g1891 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 320 IPR013087 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 292 315 IPR013087 -
Acco08g1891 400 SUPERFAMILY beta-beta-alpha zinc fingers 197 224 IPR036236 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 323 347 IPR013087 -
Acco08g1891 400 SMART c2h2final6 68 90 IPR013087 -
Acco08g1891 400 SMART c2h2final6 290 315 IPR013087 -
Acco08g1891 400 SMART c2h2final6 260 281 IPR013087 -
Acco08g1891 400 SMART c2h2final6 24 47 IPR013087 -
Acco08g1891 400 SMART c2h2final6 321 347 IPR013087 -
Acco08g1891 400 SMART c2h2final6 131 155 IPR013087 -
Acco08g1891 400 SMART c2h2final6 232 257 IPR013087 -
Acco08g1891 400 SMART c2h2final6 200 224 IPR013087 -
Acco08g1891 400 SMART c2h2final6 160 185 IPR013087 -
Acco08g1891 400 Gene3D Classic Zinc Finger 319 344 - -
Acco08g1891 400 Gene3D Classic Zinc Finger 64 106 - -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 202 224 IPR013087 -
Acco08g1891 400 SUPERFAMILY beta-beta-alpha zinc fingers 273 325 IPR036236 -
Acco08g1891 400 SUPERFAMILY beta-beta-alpha zinc fingers 65 99 IPR036236 -
Acco08g1891 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 160 IPR013087 -
Acco08g1891 400 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1891 Acco-ChrAcco08 31838028 31840697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1891 128 350 C2H2 Transcription Factor Family AT1G72050 50.545 9.25e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco08g1891 zf-C2H2 0.0015 CL0361