Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1880 ATGACACACAAATCCTCGTTTCTTCTCTCATCCTTCTTCTACTTTCTCTCCTTAGTTATTGCAGCCCATCATGCTACAAGCTTAAGCTCAATAATACTAAATCCATCTCCAAGACAAGCACTTCAAGAAAACAGAGTTTTTCTTGCGGAACAAAACACAGAGCCGCCTGATTATCGGTATGCGTGTCTGGACCAAAGTGGCGTGGCTCCATCAAGCAAATACCAAAGCAATCTCAAGAGTCTCATATCTTCAGTTTCTTCTGATGCTGCAACCAGCAATGGATTTGGTAACAGAACTGAAGGTAGTGATGAAGAAGATATGGCGTATGGGCTTTATCTTTGTAGAGGGGATGTGAATTCAAGTTTGTGTCATTCTTGTGTTGAAGATTCTAGCAGATTGATCCAACAACATTGTCCCAACAACGCTACTGCAGTTTTATGGTATCCATTTTGCCTTCTGAGGTACTCAAACCAGTATTTCTTCGGCAATCTCACGCTAAGGCCTAGGATTCCCATGTTTGATGCATCGCAAAACTTCTCGAGTGCCGGAGAGTTTGACAGTGATGCTAGGATTCTGATGAACGGTTTGATACAGACAGGTTCAGAGACACACCTAATGTTTGGGACACATGTGTTCAACATAAATGGCACCCAGAAAAGGTATGGTTGGGTTCAGTGCAGCAGAGACATAACCAGTGAAGAGTGCAGAAAATGTCTAAGCAATATGCTTGAAGATGTTGTGAATTGTTGTGAAGGCAAGAGGGTTTGGAGAATATTTTCTCCTAGTTGTATTGTCATGTATGAGACTCAGCCTTTCTTGGTAAATGACACTGGGTTGATTGCTCCAACGTCCCAGCCAGGTGAGGAAAGGAGTAACAGGACAATGCTTATAGTTATCATCGTTATAAGTGGAGTAGTAGTGCTCACTCTATTGGTTTTCTGCACAATCTACTTCAGGTTCTTGAGAAAGAAAAAAGACAAACTAGCACTGCAGAAAGATGGGCTAAATCCAGTATTTTATCAAGATCAAACTGACGAAGAGAATAATATGAGTGCCGACCTCCCTACGATGTCCCTGAAAACTATTCTTGAAACTACTTGTAACTTTTCTGATGAATATAAATTGGGACAAGGTGGATTTGGCTCTGTTTACAAGGGTGTTTTACCTGATGGGAAGGAAATAGCAGTAAAAAGGCTGTCAAAAACTTCAGGGCAAGGATTAAACGAGTTCAAGAATGAAGTGATATTGATTGCAAAATTGCAGCATCGGAACCTTGTTAGACTGTTAGCTTGCTGCATTGAGCAAAACGAAAAGCTACTTGTTTATGAGCACATGCCTAATTCTAGCCTTGATTTTCACCTATTCAGCATAGAGAAGCGTTCCAAGTTGGAATGGAAAATACGATTAAGCATCACTAATGGAATTGCAAAAGGGCTTTTATATCTCCATGAAGACTCTAGACTAAGGGTTATTCATAGGGATCTAAAAGCTAGTAATATTTTATTAGACCACGAAATGACTCCCAAAATTTCAGATTTTGGATTAGCTAAAGTTTTTGGAGACAACCAAAGGCAGGCAAACACAATTAGAGTTGTAGGTACCTATGGTTACATGGCTCCAGAATATGCTATGGAAGGCTTATTTTCAGTAAAATCCGATGTTTTTAGCTTTGGTGTTCTTTTACTTGAAATCATTAGTGGGAAAAGGAATGGTGGATTCTATCTTTCAGAACATGGCCAAAGCCTTCTCATATATGCATGGAGGCTCTGGTGTGAAGGGAAGGGCTTGGACCTGATGGATCCAATACTAGAAAGGTCATTTGAACCTTCTGAAGTTCTCAAGTGTATCCACATTGGCCTCCTATGTGTGCAAGAAGATGCAGCAGACAGACCAACAATGTCAAGTGTTGTACTTATGCTTGCAAGTGACTCAGTGAGCCTTCCAAGGCCAACACAACCTGCATTTTCTGTTGGAAGAGGTTTCAAGGAGAAAGAATCTTCATCAAAAAATACTACACATGACTCCATCAATGGAGTAACTATTTCTGAAGTTAAAGCTAGATGA 2064 0.4041 MTHKSSFLLSSFFYFLSLVIAAHHATSLSSIILNPSPRQALQENRVFLAEQNTEPPDYRYACLDQSGVAPSSKYQSNLKSLISSVSSDAATSNGFGNRTEGSDEEDMAYGLYLCRGDVNSSLCHSCVEDSSRLIQQHCPNNATAVLWYPFCLLRYSNQYFFGNLTLRPRIPMFDASQNFSSAGEFDSDARILMNGLIQTGSETHLMFGTHVFNINGTQKRYGWVQCSRDITSEECRKCLSNMLEDVVNCCEGKRVWRIFSPSCIVMYETQPFLVNDTGLIAPTSQPGEERSNRTMLIVIIVISGVVVLTLLVFCTIYFRFLRKKKDKLALQKDGLNPVFYQDQTDEENNMSADLPTMSLKTILETTCNFSDEYKLGQGGFGSVYKGVLPDGKEIAVKRLSKTSGQGLNEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEHMPNSSLDFHLFSIEKRSKLEWKIRLSITNGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMTPKISDFGLAKVFGDNQRQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRNGGFYLSEHGQSLLIYAWRLWCEGKGLDLMDPILERSFEPSEVLKCIHIGLLCVQEDAADRPTMSSVVLMLASDSVSLPRPTQPAFSVGRGFKEKESSSKNTTHDSINGVTISEVKAR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1880 687 ProSiteProfiles Gnk2-homologous domain profile. 167 272 IPR002902 -
Acco08g1880 687 Gene3D - 57 160 IPR038408 -
Acco08g1880 687 Gene3D - 171 272 IPR038408 -
Acco08g1880 687 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 65 684 - -
Acco08g1880 687 Gene3D Phosphorylase Kinase; domain 1 334 444 - -
Acco08g1880 687 FunFam Cysteine-rich receptor-like protein kinase 10 170 272 - -
Acco08g1880 687 MobiDBLite consensus disorder prediction 656 687 - -
Acco08g1880 687 Pfam Salt stress response/antifungal 177 269 IPR002902 -
Acco08g1880 687 Pfam Salt stress response/antifungal 68 158 IPR002902 -
Acco08g1880 687 Gene3D Transferase(Phosphotransferase) domain 1 445 647 - -
Acco08g1880 687 SUPERFAMILY Protein kinase-like (PK-like) 352 656 IPR011009 -
Acco08g1880 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 444 - -
Acco08g1880 687 FunFam Cysteine-rich receptor-like protein kinase 28 58 159 - -
Acco08g1880 687 ProSiteProfiles Gnk2-homologous domain profile. 56 160 IPR002902 -
Acco08g1880 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Acco08g1880 687 Pfam Protein tyrosine and serine/threonine kinase 373 637 IPR001245 GO:0004672|GO:0006468
Acco08g1880 687 ProSiteProfiles Protein kinase domain profile. 369 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1880 687 SMART serkin_6 369 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1880 687 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Acco08g1880 687 FunFam Liguleless narrow1 445 648 - -
Acco08g1880 687 CDD STKc_IRAK 375 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1880 Acco-ChrAcco08 31506636 31511722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1880 53 655 Receptor kinase-like Gene Family AT4G05200 40.968 2.16e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco08g1880 PK_Tyr_Ser-Thr 2.7e-45 CL0016