Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1836 ATGAGGATAAATATTTTGTTCGCCAGCAATTTCGGTCCTCTCCGCTTCAGCTTGGCGTCCTTCTCCACGGTTCTCTCTGCTCCAGCCATGGCTACTGCGAGGACTGTCAAGGATGCTTCGCCTCACGAGTTCGTCAAGGCCTACGCGGCTCACCTGAAGAGATCGGGAAAGATGGAGCCTCCTGAGTGGATTGATATAGTAAAGACTGCAAGATTTAAAGAATTGGCCCCGTATGATCCTGATTGGTACTATATTAGGGCTGCATCCATGGCCAGAAAAATCTACTTGAGAGGGGGCCTTGGTGTTGGTGCTTTCCAAAGGATCTATGGTGGAAGCAAGAGGAATGGTAGCCGTCCTCCTCATTTTTGTAAGAGCAGTGGTGCTATTGCTCGTCACATTCTTCATCAGTTGCAGAACATGAACATTATCGAGGCCAACCCCAATGGTGGCAGAAGAATTACTCCTAGTGGTCGGAGAGATCTTGACCAAGTCACTGGCCGGATAGTGGTTGCACCTTGA 519 0.4933 MRINILFASNFGPLRFSLASFSTVLSAPAMATARTVKDASPHEFVKAYAAHLKRSGKMEPPEWIDIVKTARFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILHQLQNMNIIEANPNGGRRITPSGRRDLDQVTGRIVVAP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1836 172 PANTHER 40S RIBOSOMAL PROTEIN S19 30 167 IPR001266 GO:0003735|GO:0005840|GO:0006412
Acco08g1836 172 Gene3D - 16 171 IPR036388 -
Acco08g1836 172 SUPERFAMILY "Winged helix" DNA-binding domain 35 169 IPR036390 -
Acco08g1836 172 FunFam 40S ribosomal protein S19 31 172 - -
Acco08g1836 172 Pfam Ribosomal protein S19e 35 169 IPR001266 GO:0003735|GO:0005840|GO:0006412
Acco08g1836 172 SMART Ribosomal_S19e_2 35 171 IPR001266 GO:0003735|GO:0005840|GO:0006412
Acco08g1836 172 ProSitePatterns Ribosomal protein S19e signature. 119 138 IPR018277 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1836 Acco-ChrAcco08 30187289 30190188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1836 30 172 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 80.420 1.86e-87 251