Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1779 ATGCAAGGAAGATCAGGTCAAAATTCAGGATCCATAGATAAGACAAGGGTTTTAGATGTTAAACCTCTGCGTACTTTGGAACCCGTGTTTCCAAATTCAGGTCAGGCTACTTCCTTTGATGGCGCCTGTCCCACTGGGTTTTATTCCTTTTTCCCATTTGGTGCATCTCAAGGACCTCAAGCATCGCCTCCTAGGGTTCCCATGCCAACTCCTTTACGGTCTTTTAGAAGCTCTAACACTGGAGAAGCCGAGTTTCCTGGAGCTTCCAATGGAGAAAATACTGATACCCATGCAGCACCAAACATATCCAACTTCTCCAAAAAGAGGCCTAAGATAAGTCATGATCTGCAAATTGATGTGAGTTCTTTATTAGGCATTGGCAAAAATGAACGTGAAGATGGTAATCGGGAATTGGTTACTCTTCTACTCATGACTTTTGATGGGCTTAGGAGAAGGATCGGCCAGCTTGAAGATTCCAAGGAATTGACACTAGGATTGAGCAAGCGAGCCGATATGAGAGCTGGCAACATTTTGATGAGTGCGGGTATTCGAACAAACATGAGGAAAAGAATAGGAGCTGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTCCGACTAGAACTATGTATCGTGGGTCTCCATAGTCAGTCTATGGGTGGGATCGACTACACAAATATGGGCAGTAAAAATGATTCTGATCCTTTGGCTTTAGCCATTGTTTCCTCCGGAAAATATAATGACAATACAGAGGAAAGTGATATTTTGATCTATAGTGGTCAGGGTGGGGATAAGGGGGATGATCAGAAGCTAGAAAGGGGTAATCTTGCTTTGGATAGAAGCTTGCGACAGAAGAATGATGTCAGGGTAATACGTGGCATGAAAGATCAAATGAGCTCAACTTCAAAGGTCTATATCTATGATGGGCTTTATAAGATTCAGGATTCATGGGTAGAAAAAGGGAAATCTGGTGGTGGTGTATTCAAGTATAAGTTGGTGAGAGTTCCTGGACAACCCAGAGCCTTTGCTGCTTGGAAATCTATTGAAAGGTGGAAGGCTGGCATCGCTTCTAGGACTGGGCTCATTCTTGCAGACCTCTCCTCAGGAGCTGAGAAAATTCCTGTGTCGCTTGTCAATGATGTGGATGATGAGAAAGCACCTGGTTATTTCACCTATCTCCATTCTCTTAGATATTCAAAGTCCTTCATTGTTTCAAAATCCTATGATTGCTGCAACTGTCAAAAAGATTGCATTCCTGGCGATTTAAACTGTTCTTGCATCCGGAGGAATGAAGGTGATTTTCCATATACAGGGAATGGCATTTTAGTGAGTCGGAAGAAATTGGTTCATGAATGTGGCCCTTCATGTCAATGTTTTCCTAACTGTAAAAAGCGTGTATCCCAAACTGGGTTAAAATACCGCATGGAAGTATTCAAAACAAAGGATAGAGGATGGGGCCTCCGAGCATTGGATCCTATTCGTGCCGGCACCTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAAGGTGAGTTGGAATGGAAATAATGATGAGTATGTTTTTGACACAACTCGAATTTATCATCCATTCAAGTGGAACTATGAACCTAAGTTATTTGAAGGACCTGGTTTGAATGATTCGAGTGAGGATTATAATATCCCATCTCCTCTAATTATTAGTGCCAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTCTTTTGGCAGCCAGTTTCATATGAAGAAAACAGTCAACCCGTAGTGCACATTTCCTTTTTTGCTCTTAGACACATTCCTCCACTGACAGAATTGACATATGATTATGGGATTACCCGTTCTGAGTCTACTGTGGGTCAAAGTACACCCATATGGAAAAAGAAATGTTTATGTGGATCATCAAAATGCCGGGGTTCTTTTGGTTGA 1947 0.4201 MQGRSGQNSGSIDKTRVLDVKPLRTLEPVFPNSGQATSFDGACPTGFYSFFPFGASQGPQASPPRVPMPTPLRSFRSSNTGEAEFPGASNGENTDTHAAPNISNFSKKRPKISHDLQIDVSSLLGIGKNEREDGNRELVTLLLMTFDGLRRRIGQLEDSKELTLGLSKRADMRAGNILMSAGIRTNMRKRIGAVPGVEIGDIFFFRLELCIVGLHSQSMGGIDYTNMGSKNDSDPLALAIVSSGKYNDNTEESDILIYSGQGGDKGDDQKLERGNLALDRSLRQKNDVRVIRGMKDQMSSTSKVYIYDGLYKIQDSWVEKGKSGGGVFKYKLVRVPGQPRAFAAWKSIERWKAGIASRTGLILADLSSGAEKIPVSLVNDVDDEKAPGYFTYLHSLRYSKSFIVSKSYDCCNCQKDCIPGDLNCSCIRRNEGDFPYTGNGILVSRKKLVHECGPSCQCFPNCKKRVSQTGLKYRMEVFKTKDRGWGLRALDPIRAGTFICEYAGEVIDRAKVSWNGNNDEYVFDTTRIYHPFKWNYEPKLFEGPGLNDSSEDYNIPSPLIISAKNVGNVARFMNHSCSPNVFWQPVSYEENSQPVVHISFFALRHIPPLTELTYDYGITRSESTVGQSTPIWKKKCLCGSSKCRGSFG 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1779 648 ProSiteProfiles SET domain profile. 473 617 IPR001214 GO:0005515
Acco08g1779 648 SUPERFAMILY PUA domain-like 174 356 IPR015947 -
Acco08g1779 648 Gene3D - 175 354 IPR036987 -
Acco08g1779 648 Pfam SET domain 484 617 IPR001214 GO:0005515
Acco08g1779 648 Pfam SAD/SRA domain 191 338 IPR003105 -
Acco08g1779 648 Gene3D SET domain 355 647 IPR046341 -
Acco08g1779 648 ProSiteProfiles Post-SET domain profile. 632 648 IPR003616 -
Acco08g1779 648 SMART G9a_1 187 338 IPR003105 -
Acco08g1779 648 Pfam Pre-SET motif 367 465 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco08g1779 648 SMART set_7 473 623 IPR001214 GO:0005515
Acco08g1779 648 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 175 353 - -
Acco08g1779 648 ProSiteProfiles Pre-SET domain profile. 409 470 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco08g1779 648 MobiDBLite consensus disorder prediction 74 97 - -
Acco08g1779 648 SUPERFAMILY SET domain 373 645 IPR046341 -
Acco08g1779 648 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 105 642 - -
Acco08g1779 648 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 648 IPR025794 GO:0016571
Acco08g1779 648 ProSiteProfiles YDG domain profile. 192 334 IPR003105 -
Acco08g1779 648 SMART preset_2 363 457 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1779 Acco-ChrAcco08 28133349 28135295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1779 1 648 Su(var)3-9 homologs AT1G73100 51.988 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco08g1779 SAD_SRA 2.5e-45 CL0178