Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1778 ATGCACTCCCTTCCGCATCTCCAAGGATTTTGGCTGCAAAAGGAAATCAAGGACGAGAGAACGAACTGCCACACCACTGTGACGACGTCCCTCTACGCGAGCAAGAGCATCGGCGACCCATTTCAGGCGAGTTTGCAATCTAATATGACACCAGTTTGCCCTTTTGTCAAAGCTGCTCGTCCTGATGATACCACTTCAAAAAAATCTGGCGAAAATTCAGTTAAGCATCAAGCTGGGTCTGAGAGTAAGGCAAAAAAAGAATCTAACAATCCAGCTAGTGCTTCTTCTAAGTGCCCTTTTGAATATGACTCCCAAGTGAAAAAAGAGTCTAACAATCCAGTCAGTGGTTCTCCTAAGTGCCCTTTTGGATATGACTCCCAAGTGAAAAAAGAGTCTAACAATTCAGCTAGTGCTTCTCCTAAGTGCCCTTTTGGATATGACACCCAAACATTTAAGATTGGTCCTCTTAGCTGTATGATATGCCAGGCACTCCTATTTGAAACTAGCAAATGTGTGCCCTGTTCTCATTCTTTCTGCAAGGCATGTATATCACGCTTTAAGGACTGTCCATTATGTGGGGCTGATATTGAGAAGATTGAGCCTGATGCTAATCTTCAAGATATAGTTGATCGCTTTATTGAAGGTCATGCTAGGATCAAAAGGTCTGTTAGTTCAGACAAAGGAGGAGGAGAAGAGAATAAACCAGTCACATATGAGGATGTATCTTTGGAAAGGGGTTCCTTCTTAGTGCAACAGGCCATGAGGGCATTCCATGCTCAGAATATAGAAAGTGCCAAATCAAGACTCAGCCTCTGTGCAGAAGACATACGTTGTCAGTTAGAAAAGATGGGTAACACATCAGAATTATGTTCACAGCTTGGAGCAGTCTTGGGCATGCTTGGTGACTGCTGTCGAGCTATGGGGGATGCTAGTTCTGCAATTTCTTTTTTTGAAGAAAGTGTTGAATTTCTCTCGAAATTGCCAAGGGATGACTTGGAGATTACACATACACTTTCTGTTTCTCTGAATAAAATTGGAGATCTTAAATATTATGACGGAGATCTACAAACAGCCAGATCCTACTATTTTCGGTCTTTGAATGTTCGGCGTGATGTAGTCAAGCATCACTCGGATGTTCCATCCCAGGTTCTAGATGTTACTGTTTCTCTTGCAAAAGTTGCAGATGTGGACAGGAATTTGGGAAACGAAAGTTTGGCAACTGATGGATTTCAAGAAGCTATAGACTTGTTGGAGTCGTTGACACTGAAATCTGAAGCCAGTGGACTTGAGCAACGTCGACTTTCGGTGCTTGGGTTCCTCAGAAGCCAACTTACGGATAAACAAGAACAAGCCGAGGCAACAGTCTAG 1368 0.4306 MHSLPHLQGFWLQKEIKDERTNCHTTVTTSLYASKSIGDPFQASLQSNMTPVCPFVKAARPDDTTSKKSGENSVKHQAGSESKAKKESNNPASASSKCPFEYDSQVKKESNNPVSGSPKCPFGYDSQVKKESNNSASASPKCPFGYDTQTFKIGPLSCMICQALLFETSKCVPCSHSFCKACISRFKDCPLCGADIEKIEPDANLQDIVDRFIEGHARIKRSVSSDKGGGEENKPVTYEDVSLERGSFLVQQAMRAFHAQNIESAKSRLSLCAEDIRCQLEKMGNTSELCSQLGAVLGMLGDCCRAMGDASSAISFFEESVEFLSKLPRDDLEITHTLSVSLNKIGDLKYYDGDLQTARSYYFRSLNVRRDVVKHHSDVPSQVLDVTVSLAKVADVDRNLGNESLATDGFQEAIDLLESLTLKSEASGLEQRRLSVLGFLRSQLTDKQEQAEATV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1778 455 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Acco08g1778 455 Gene3D Tetratricopeptide repeat domain 276 436 IPR011990 GO:0005515
Acco08g1778 455 SUPERFAMILY RING/U-box 153 199 - -
Acco08g1778 455 MobiDBLite consensus disorder prediction 56 98 - -
Acco08g1778 455 ProSiteProfiles Zinc finger RING-type profile. 158 192 IPR001841 -
Acco08g1778 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 232 IPR013083 -
Acco08g1778 455 PANTHER RING FINGER PROTEIN 41, 151 139 440 - -
Acco08g1778 455 SMART ring_2 158 192 IPR001841 -
Acco08g1778 455 MobiDBLite consensus disorder prediction 84 98 - -
Acco08g1778 455 SUPERFAMILY TPR-like 290 429 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1778 156 208 C3H Transcription Factor Family AT2G30580 32.812 9.99e-06 45.4