Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1777 ATGGAAGACGTGAGTCAAATGACCAAAAGGATTGAAGATGAGGTTCTCCTCAAGGATCAGACTAGTTTACATTTAAATGATGAGAGTAATGGAAGAAGAGCAGGTGGAGTTGTCTTGAAGAAAGGGCCATGGACATCTACTGAAGATGCTATCTTAGTGGACTATGTCAGGAAGCATGGAGAGGGCAACTGGAATGCTGTTCAGATCTATTCAGGCCTGTCTCGCTGTGGAAAAAGCTGCCGGCTGCGATGGGCGAATCACCTAAGACCAAATCTAAAGAAAGGTGTATTTACTACGGAAGAAGAGCAGCTAATTGCTGAACTGCATGCTAAGATGGGAAACAAATGGGCACGCATGGCTGCATATTTACCTGGTCGGACAGATAATGAGATCAAGAACTATTGGAATACCCGGATCAAGAGGCATCAACGAATTGGCTTGCCACTTTATCCCCCTGATGTATGTTTGCAATCAAGGCAGCAAGCCCAACACAGTGTTGGAGTTAATGGTATTGAAAGAGGGTATCGTGAATTAATGTCAAAAACCAATGGTGAGATACAAAATGCTATACCCAATAGCGTGAATGCTAGTCAGGAGTTCTTACCTTATGTGCCCAAGCTTTCTGATATATCTCCTAATAGCATTCTGCTGGAAGGTTATGGCTTATCTCCAAATTGTAATATTCTGCCATCAACTTTACCTTCCCATTACCACCTTGGAGGGTCACTTGGTTCTAGCGGCATTAACAGAAACAGATCTTATCCATTTGACCGTGTTTGGAATAATGCTTCAGATATGATTGCACAATCATTTGGAGTGAATTCTCCTCTTGATCACGATATGAACACCATTAGAGGCTTGAAGAAGCATGACTTCTAA 879 0.4243 MEDVSQMTKRIEDEVLLKDQTSLHLNDESNGRRAGGVVLKKGPWTSTEDAILVDYVRKHGEGNWNAVQIYSGLSRCGKSCRLRWANHLRPNLKKGVFTTEEEQLIAELHAKMGNKWARMAAYLPGRTDNEIKNYWNTRIKRHQRIGLPLYPPDVCLQSRQQAQHSVGVNGIERGYRELMSKTNGEIQNAIPNSVNASQEFLPYVPKLSDISPNSILLEGYGLSPNCNILPSTLPSHYHLGGSLGSSGINRNRSYPFDRVWNNASDMIAQSFGVNSPLDHDMNTIRGLKKHDF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1777 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Acco08g1777 292 CDD SANT 97 137 IPR001005 -
Acco08g1777 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Acco08g1777 292 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Acco08g1777 292 Gene3D - 40 93 - -
Acco08g1777 292 FunFam Transcription factor GAMYB 96 142 - -
Acco08g1777 292 CDD SANT 43 88 IPR001005 -
Acco08g1777 292 SUPERFAMILY Homeodomain-like 40 135 IPR009057 -
Acco08g1777 292 FunFam MYB-related transcription factor 40 93 - -
Acco08g1777 292 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Acco08g1777 292 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Acco08g1777 292 Gene3D - 96 142 - -
Acco08g1777 292 ProSiteProfiles Myb-like domain profile. 39 88 IPR001005 -
Acco08g1777 292 SMART sant 93 141 IPR001005 -
Acco08g1777 292 SMART sant 40 90 IPR001005 -
Acco08g1777 292 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1777 Acco-ChrAcco08 28052954 28057196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1777 29 235 MYB Transcription Factor Family AT3G11440 56.338 4.02e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g1777 Myb_DNA-binding 6.2e-14 CL0123