Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1632 ATGACTAAAGACAACTCCGGTTTCAGAAGAGGGTTTCTCTGGAGGATTGCTTTGCGTCTCTGGCCTTGCAACACGGGGATCATAGAGTTAAAAAAGGCAAATATGGCGTATGCAGCGATGAAACCTTCAGCTAAACCTGGCTTGGAGGAGTCTCAGGAGCAGATCCATAAGATAAGGATCACTCTTTCCTCTAAGAACGTGAAAAATCTCGAGAAAGTTTGTGCTGACTTGGTTCGAGGTGCCAAGGACAAGAGGCTCAGGGTCAAGGGACCTGTGAGAATGCCAACTAAAGTTCTTAACATCACCACTAGGAAATCCCCTTGTGGTGAAGGTACCAACACTTGGGACAGATTTGAACTTCGTGTGCACAAGAGAGTGATCGACTTGTACAGCTCCCCAGATGTGGTTAAGCAGATTACTTCAATTACAATTGAACCTGGTGTAGAAGTTGAGGTTACCATTGCAGATGCTTGA 474 0.4557 MTKDNSGFRRGFLWRIALRLWPCNTGIIELKKANMAYAAMKPSAKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1632 157 Hamap 30S ribosomal protein S10 [rpsJ]. 55 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 SMART Ribosomal_S10_2 59 153 IPR027486 -
Acco08g1632 157 NCBIfam 30S ribosomal protein S10 56 154 IPR005729 GO:0003735|GO:0006412|GO:0015935
Acco08g1632 157 PRINTS Ribosomal protein S10 family signature 57 70 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 PRINTS Ribosomal protein S10 family signature 114 128 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 PRINTS Ribosomal protein S10 family signature 92 107 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 39 156 IPR001848 GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 SUPERFAMILY Ribosomal protein S10 57 154 IPR036838 -
Acco08g1632 157 Gene3D Ribosomal protein S10 domain 42 156 IPR036838 -
Acco08g1632 157 ProSitePatterns Ribosomal protein S10 signature. 81 96 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Acco08g1632 157 Pfam Ribosomal protein S10p/S20e 59 153 IPR027486 -
Acco08g1632 157 FunFam 40S ribosomal protein S20 41 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1632 Acco-ChrAcco08 22742797 22745742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1632 35 157 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 89.431 5.47e-76 220