Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1604 ATGGCCTCAATGATTGTTAAGCTATTGTTTTCCCTCTCTTTAGTTTCCTCACTTTTCTCAATATCATCATCATCTTCTTCTTCGTCAATAGAATATTGGTGCAACCAAACTCCTCACCCTGAGCAATGCATATTCCACATGAGCCACAGTCACCACCGGTTCAGACCGAACCATCCTTCAGAGTTCAACAAAATGCTGGTTCAATTAGCACTGGACCAAGCCCAAGCAATGCATAATAAAGCTCAAGAATATGGTCCTAAATGTGAGACCAATATGCAGAAATGTGTATTCAGTGATTGTTTAAAGCTCTATGACAATACCATCTTCCATCTAAACCGAACCCTTCATGGCCTACACACATCTTCTTGCTCTCTATCAGACGCACAAACGTGGCTCAGCACTTCGCTGACAAACATCGAAACTTGCCGGAGCGTCGCATTGCAGCTCGGAGTCGGAGAGTTTACATCTCAAAATAATGTGAGCGACAACGTTAGAAAGATGATAAGCAATGTGTTGGCTGTCAATGGGAAATTCCTGAAGCAAGAGAATTACACAGAAGAAGAGATCAAAGCTCATAGTTTTCCGAGTTGGTTTTCTCGGCACGACAGGAGGTTGTTCAGTTTGAAACCATCTTCTGTGAAGGCAAACCTTGTGGTGGCCCAAGATGGGACGGGGCATTTTAAGACGGTGCAAGCCGCCATTGATGCAGCTTCAAGGAGAAAAGTGAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGTATTTATGAAGAGAATATTGAAGTTGATAAGGATAATGAAAATCTCATGATTATTGGTGATGGAATGAGACTCACCATTATAACTGGTAGTAAGAGCGTCAAAGATGGAATCACTCCCTCTATGTCTGCAACTGCAGGTGTCGATGGTGCTCACTTCATTGCACGGGACATCACTTTTAGAAACACGGCTGGTCCTGAAAATGGTCAAGCCGTGGCGCTCCGATCAGCCTCCGACCTCTCGGTCTTCTATCGGTGCTCCATTGAAGGCTATCAGGACACTCTAATGGCTGATTCACAACGTCAATTCTATAGAGATTGTAGAATTTTCGGCACAGTGGATTTCATTTGGGGAAATGCTGCGGTTATTCTACAAAATTGTACGATTCTCGTAAGAAAGCCACTTCAAGGACAACCAAACATGATCACAGCACAAGGACGAGACGACCCGTTCCAAAACACCGGAATAGCAATAATTAGTTCTCAAATCCAAGCAGCGCCGGACTTCAGGCCGGTGTATCACTCATTTGAAACCTACTTGGGTCGGCCATGGCACCAATATGCTCGAGTGGTTATCATGAAAACTTATATTGAAGGCTTGGTAAATCCATTGGGATGGTCTCAATGGGACAATAGTGCTGCTGGTGAAGATACATGTTACTTTGGGGAATATATGAACTATGGGCCTGGTTCATCTACAAAAAGTAGAGTACAATGGCCTGGCTTTCATGTCATAACTAATCCAAATGAGGCAAACCAGTTTAGTGTTGTGAGCTTCCTTGCTGGTGGCACGTGGTTGCCTCGCACTGGGGTCCCTTTTAGTATTGGTGTTAATTAA 1593 0.4388 MASMIVKLLFSLSLVSSLFSISSSSSSSSIEYWCNQTPHPEQCIFHMSHSHHRFRPNHPSEFNKMLVQLALDQAQAMHNKAQEYGPKCETNMQKCVFSDCLKLYDNTIFHLNRTLHGLHTSSCSLSDAQTWLSTSLTNIETCRSVALQLGVGEFTSQNNVSDNVRKMISNVLAVNGKFLKQENYTEEEIKAHSFPSWFSRHDRRLFSLKPSSVKANLVVAQDGTGHFKTVQAAIDAASRRKVKTRFVIRVKKGIYEENIEVDKDNENLMIIGDGMRLTIITGSKSVKDGITPSMSATAGVDGAHFIARDITFRNTAGPENGQAVALRSASDLSVFYRCSIEGYQDTLMADSQRQFYRDCRIFGTVDFIWGNAAVILQNCTILVRKPLQGQPNMITAQGRDDPFQNTGIAIISSQIQAAPDFRPVYHSFETYLGRPWHQYARVVIMKTYIEGLVNPLGWSQWDNSAAGEDTCYFGEYMNYGPGSSTKSRVQWPGFHVITNPNEANQFSVVSFLAGGTWLPRTGVPFSIGVN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1604 530 PANTHER PECTINESTERASE 15 519 - -
Acco08g1604 530 Pfam Pectinesterase 216 514 IPR000070 GO:0030599|GO:0042545
Acco08g1604 530 Pfam Plant invertase/pectin methylesterase inhibitor 29 173 IPR006501 GO:0004857
Acco08g1604 530 SMART PMEI_2 25 174 IPR006501 GO:0004857
Acco08g1604 530 NCBIfam pectinesterase inhibitor domain 4 176 IPR006501 GO:0004857
Acco08g1604 530 Gene3D - 210 529 IPR012334 -
Acco08g1604 530 CDD PMEI-like_3 33 180 - -
Acco08g1604 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Acco08g1604 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Acco08g1604 530 FunFam Pectinesterase 210 529 - -
Acco08g1604 530 SUPERFAMILY Pectin lyase-like 213 528 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1604 Acco-ChrAcco08 21873518 21875202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1604 21 529 Carbohydrate Esterase AT3G47400 53.802 0.0 564