Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1598 ATGGACGCTCTTGAATCGAACCCTAATCCTCCTCCCTTTCTTCCGTCCGATCATAACCCTGCTCCTCCGCCACCGGAAAGCTATGCATCGGATCTCCAGAAGCCATATGAACAAACTGTGAATTTCGATTATCAAAATTCTTTGAAAACCCTAGCTTCGAATGACCAAAACGTTAAAGGTCAACCCCAATCTGGTTATGGGAATGGCCATGTGAACGGACTGGATAACAGTCAGGGCGGGACCGATAGCAATAGCAACTCGAAGCCTTTGACTTCGAAGCCTTTGATTTCTGAAAACGCCGGTACCAACAATACCCAGAGTGGTACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGATGGGACCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAGGCTGGTGGCGGAACAAAGAGGAGGAAGTCACGCTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTGCAATCAGGTCTGCCTCTAGATGATCGCCCTGAAGGTGCTAGATCTCCTTCGCCTGAACCTATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATAAAGAAAAACCCTGCATTCAAGCCACCCGCTGATTATAGGCCACCGAAGCTTCAGAAGAAGCTGTATATACCGATGAAAGAATATCCCGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAATACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGTGGTAAAGGGTCCGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTCCTTGTGGAGGCAGACACACCAGAATCACTTGAAGCTGCCGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCAGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCAGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGTCCTACGCGCACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCATTGTGGCGATGGTGGTCACCCCAGCATAGATTGTCCAGTGAAAGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAGAACTTCTTGGCAGAGCTGGGAGGGACAGTTCCAGAATCAGCAATAAAGCAGAACCCCACGTTGGCAATTGGTCCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGAGTGGTGGTACTTCACAACCTGGCTTAGGGGCTAATCCGATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGATATTTACCGCCCACTCTTGATGATGATGCTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGATCGGATGACTGGTTTAAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCGAATAATGCAATAATGGCCATGAATGGCTATCGCCTTGAGGGCAGAACCATTGCAGTGAGAGTTGCCGGTAAGCCTCCTCAGCCTACTGTGCCTCCTGGCCCTCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAATTGGTGCCTATCCATCCCAACAATATGCTGGTGGTGGTCCTCTTGGTGCTGCCCCCAATGGAAGTTTTGCCGGTGCCCCAGTTCCATGGGGACCTCCTGTCCCTCCACCGTATGCTACTTATGCTCCTCCCCCTCCTGGATCCACTATGTACCCTCCAATTCAAGGTCAATCTATGCCTCCATACGTTGTTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTACAACTTCTAGTGAATCACAGCAGAGTTTTCCTCCAGGAGTGCAATCTGACAGTAGCTCCTCTACTCAATCTACGACGGCCAATATTTATGGGAGTTCAATACCTTCTATGCCACCAACTGCTCAACCTACATATGCCACATCTTACTGTTATCCGCCTTACTATGGTGCAGTCCCCCCTCCACCTCCCCCACCTGCCCCTGCTCCTATCTCCACTTCAGATCATATGCATTGGGCTACAAACCCTTCAGTGCCACCCCCGGCATCAACTGCAGAGAAGACAACATACGGTACAGATCAATCTCAGAGCTTAGGAAATGTGCCTTGGGCCACAAATCCTCCAATGCCGCCACCCCCTGCTTCAACTGCAGAGAAGACAACATACGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2472 0.4814 MDALESNPNPPPFLPSDHNPAPPPPESYASDLQKPYEQTVNFDYQNSLKTLASNDQNVKGQPQSGYGNGHVNGLDNSQGGTDSNSNSKPLTSKPLISENAGTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKRRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQNPTLAIGPGNSGSNPPWANNSGSSGGTSQPGLGANPIKKEIDDTNLYIGYLPPTLDDDALIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPIGAYPSQQYAGGGPLGAAPNGSFAGAPVPWGPPVPPPYATYAPPPPGSTMYPPIQGQSMPPYVVQYPPVQTAPPGAPSQPTTSSESQQSFPPGVQSDSSSSTQSTTANIYGSSIPSMPPTAQPTYATSYCYPPYYGAVPPPPPPPAPAPISTSDHMHWATNPSVPPPASTAEKTTYGTDQSQSLGNVPWATNPPMPPPPASTAEKTTYGADSEYEKFMAEMK 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1598 823 CDD KH-I_BBP 261 354 - -
Acco08g1598 823 FunFam splicing factor 1 382 435 - -
Acco08g1598 823 Gene3D - 176 253 IPR047086 -
Acco08g1598 823 MobiDBLite consensus disorder prediction 662 719 - -
Acco08g1598 823 Gene3D K Homology domain, type 1 254 382 IPR036612 GO:0003723
Acco08g1598 823 Pfam Splicing factor 1 helix-hairpin domain 151 258 IPR032570 -
Acco08g1598 823 MobiDBLite consensus disorder prediction 111 133 - -
Acco08g1598 823 SMART c2hcfinal6 409 425 IPR001878 GO:0003676|GO:0008270
Acco08g1598 823 SMART c2hcfinal6 383 399 IPR001878 GO:0003676|GO:0008270
Acco08g1598 823 FunFam splicing factor-like protein 1 254 382 - -
Acco08g1598 823 Gene3D - 383 435 - -
Acco08g1598 823 ProSiteProfiles Type-1 KH domain profile. 277 349 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 196 217 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 677 719 - -
Acco08g1598 823 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 570 IPR000504 GO:0003723
Acco08g1598 823 SUPERFAMILY Retrovirus zinc finger-like domains 380 426 IPR036875 GO:0003676|GO:0008270
Acco08g1598 823 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 577 IPR000504 GO:0003723
Acco08g1598 823 PANTHER RNA-BINDING PROTEIN RELATED 115 620 IPR045071 -
Acco08g1598 823 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 262 388 IPR036612 GO:0003723
Acco08g1598 823 MobiDBLite consensus disorder prediction 746 813 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 32 110 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 456 491 - -
Acco08g1598 823 ProSiteProfiles Zinc finger CCHC-type profile. 410 424 IPR001878 GO:0003676|GO:0008270
Acco08g1598 823 MobiDBLite consensus disorder prediction 456 486 - -
Acco08g1598 823 FunFam splicing factor-like protein 1 479 581 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 755 790 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 307 328 - -
Acco08g1598 823 Pfam KH domain 277 350 IPR004088 GO:0003723
Acco08g1598 823 MobiDBLite consensus disorder prediction 145 161 - -
Acco08g1598 823 SUPERFAMILY RNA-binding domain, RBD 495 588 IPR035979 GO:0003676
Acco08g1598 823 Gene3D - 470 582 IPR012677 -
Acco08g1598 823 SMART kh_6 262 354 IPR004087 GO:0003676
Acco08g1598 823 SMART rrm1_1 500 573 IPR000504 GO:0003723
Acco08g1598 823 MobiDBLite consensus disorder prediction 8 29 - -
Acco08g1598 823 MobiDBLite consensus disorder prediction 1 163 - -
Acco08g1598 823 ProSiteProfiles Zinc finger CCHC-type profile. 384 398 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1598 Acco-ChrAcco08 21675595 21678066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1598 499 705 Eukaryotic Initiation Factors Gene Family AT3G16380 24.775 9.39e-12 66.6