Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1578 ATGGCTCAACGTGAAATTTCCATCTTCCCTGCATTACATCTTATCTTCTCTCTTTTTGGGTCACTATGCCAGTTCACAACAGGACTTTCTCAAACTGAAGCTCTGATCAAATGGAAACAAAGTCTCCCAAACCAACCAATCTTGGATTCATGGGTCCCTCCACCTTACAACAACACCAAAGCATTTCAAAGCCCATGTTCATGGCGTGGAATAACTTGTGAGAATTCCTCAGGAAGTGTGATTGCAATAAACTTGGCTTACACTGGTCTTCAAGGTACCCTCCAAAACTTGAACTTCTCAGCATTTCCAAATCTTCTCCGCCTTGATCTCAAAACAAACAACCTCACCAGTAGTATACCAGAAAACATTGGTGTTCTCTCTAAACTGCAATTCCTTGACCTTTCCACAAATTACCTCAATGGCACTTTACCTCTTTCTCTTGCTAATTTGTCTCATGTTTACGAGTTTGATGCTTCACGAAACAATATCACCGGGATATTAGACCCTCGTCTTTTCCCTGATGGTTCAGATCAGCCCAAGACTGGACTGATAGAAATCAGAAACCTTCTCTTTCTGGACACCCTACTTGGTGGTAGAATTCCAGATGAAATAGGAAATATAAGAAATTTAATTGTACTCGCTTTAGATGGGAATAGCTTCTATGGACCTATTCCCCCATCTCTTGGGAATTGCACACATTTAAGTGTTCTTAGGATGTCTGAAAACCAACTCTCAGGCATGATTCCTCCTAGTTTTGGTAGATTGACTAATCTATCTCAGGTGTTCCTCCACATAAATAATTTACAGGGTCCTGTGCCACAAGAATTAGGAAACTCCTCTTCTTTAGTTGTCCTACATCTCGCTGAAAACAACTTCACTGGAGAGTTACCACCACAAGTTTGCAGAGGTGGCAAGCTTGTAAATTTCAGTGCTTCCTACAATAGTTTCACTGGCCCAATCCCAATAAGCCTGAGAGATTGCCCATCCTTGTATAGGGTTCGTCTTGAACATAACCAACTGACAGGTTATGCTGATCAAGATTTTGGAGTGTATCCTAATCTTACTTACATTGACTTCAGCTACAACAATATGCAAGGTGAACTCTCTTCAAATTGGGGAAGCTGCAAAAACTTGCAATACCTTGGTATGTCGGGGAATTCAATAGGCGGTGCTATACCAGATGAGATTTTTCAGCTGAAGCAGCTTGTAGAGCTACATTTGTCTTCCAATCAAATATCAGGAGAGATTCCTCAACAAATAGGGAATTCCTTTCGCCTTTCCACTCTATCTTTGAGTAGCAACAAACTTTCAGGTTTGATTCCAGAAAGCATTGGGAAGTTGTCTAATCTGCAAATTTTAGACTTGTCAACAAACATGCTAAGGGGACCAATCCCTCATCAGATGGGGGATTGCACAAACTTGCTGCGTTTAAATTTAAGCAAAAATGTCATTTCTGGCAAAGTCCCATACCAACTTGGAAATCTTGAATTCTTACAAGATTTTTTGGACCTGAGTTATAACTCACTTTCTGGTGAAATCCCTGGGGATCTTGGTAAACTCCAAAGCTTGATATGCTTGAACATGTCTCTGAATAATTTGTCAGGTCCTATTCCTAACTCCCTAACAACAATGCTAAGCTTGTCAATCCTCAATCTTTCTTACAATAATTTGGAGGGGCCAGTACAGGATAGTGGTGTTTTCAATTCTTCTAATCTAGTGGATTTGAGTCACAACCAGAACTTATGTGGGAGGATCCAAGGTTTGAAACCTTGCAAGGTCACAATTATAAAACCAATCGGAGGAGGTAACAAAAGGAAAGCTGTAATAGTTGTTACTAGTTCAATAGCATGTGCACTGGTTGTTTTGTTTGTGCTAGTTTGGATTTATGCCGTTCGTGGTAAGAGAAACTCAAGAGCTTTAAAACATAAAGCTAGAGGCAATGGGGAAAATCTATTCTCAATATGGCATTTTGATGGAAGACTTGTGTACGAGGACATAATTGAAGCAACTGAAAACTTTCACGAGAAATACTGCATTGGAGAGGGATCATTTGGAAAAGTTTACAAATTGATGTTTCCTGGAGAGGATGGAGTTTTTGCGATAAAAAGGTTGGTATGTGAAGCTGATAGCATAGACATTGAGAATATAAAAGCTTTTGAGAGTGAGATCAAAGCCTTGACTGAAACTCGCCACCGGAACATAGTCAAGCTGTATGGATTCTGTTTACAGAGCTGGGTGCATACTTTTCTGATTTATGAGTACATGGAAAGAGGGAGCTTAGCTGATATTCTCAGAAATAAGGAAGAAGCATTAGAGTTAGATTGGTCAAAAAGGGTTGAAATTATCAAAGGCGTAGCACATGCTTTGTCGTACATGCATCATGATTGTAATCCACCAATTGTTCATAGAGACATATCAATCAAAAACGTTTTATTGTCTGCAAATCTTGAAGCCCGTGTCTCAGACTTTGGCACGGCAAGGTTCTTGAAGCCTTATTCAGTGATTTGGACAACATTTGCTGGAACGTATGGTTATGCTGCTCCTGAGCTTGCATACACAGTGGCAGTGACTGAGAAAGTTGATGTGTATAGCTTTGGTGTTCTGGCTATTGAGGTGCTTATGGGAAATCATCCTGAATTTAGTATTGATTTGGCGTTTAGCACTTTCGTGCTTAGAGACAACCCCTCAATCTCGACCAACCATGAGACACATCGCCCAGATGATGGAAATAGTGACTACTCATTGATGGACTAA 2754 0.4027 MAQREISIFPALHLIFSLFGSLCQFTTGLSQTEALIKWKQSLPNQPILDSWVPPPYNNTKAFQSPCSWRGITCENSSGSVIAINLAYTGLQGTLQNLNFSAFPNLLRLDLKTNNLTSSIPENIGVLSKLQFLDLSTNYLNGTLPLSLANLSHVYEFDASRNNITGILDPRLFPDGSDQPKTGLIEIRNLLFLDTLLGGRIPDEIGNIRNLIVLALDGNSFYGPIPPSLGNCTHLSVLRMSENQLSGMIPPSFGRLTNLSQVFLHINNLQGPVPQELGNSSSLVVLHLAENNFTGELPPQVCRGGKLVNFSASYNSFTGPIPISLRDCPSLYRVRLEHNQLTGYADQDFGVYPNLTYIDFSYNNMQGELSSNWGSCKNLQYLGMSGNSIGGAIPDEIFQLKQLVELHLSSNQISGEIPQQIGNSFRLSTLSLSSNKLSGLIPESIGKLSNLQILDLSTNMLRGPIPHQMGDCTNLLRLNLSKNVISGKVPYQLGNLEFLQDFLDLSYNSLSGEIPGDLGKLQSLICLNMSLNNLSGPIPNSLTTMLSLSILNLSYNNLEGPVQDSGVFNSSNLVDLSHNQNLCGRIQGLKPCKVTIIKPIGGGNKRKAVIVVTSSIACALVVLFVLVWIYAVRGKRNSRALKHKARGNGENLFSIWHFDGRLVYEDIIEATENFHEKYCIGEGSFGKVYKLMFPGEDGVFAIKRLVCEADSIDIENIKAFESEIKALTETRHRNIVKLYGFCLQSWVHTFLIYEYMERGSLADILRNKEEALELDWSKRVEIIKGVAHALSYMHHDCNPPIVHRDISIKNVLLSANLEARVSDFGTARFLKPYSVIWTTFAGTYGYAAPELAYTVAVTEKVDVYSFGVLAIEVLMGNHPEFSIDLAFSTFVLRDNPSISTNHETHRPDDGNSDYSLMD 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1578 917 Gene3D Ribonuclease Inhibitor 367 464 IPR032675 -
Acco08g1578 917 SUPERFAMILY Protein kinase-like (PK-like) 653 884 IPR011009 -
Acco08g1578 917 ProSitePatterns Tyrosine protein kinases specific active-site signature. 800 812 IPR008266 GO:0004672|GO:0006468
Acco08g1578 917 Gene3D Ribonuclease Inhibitor 26 115 IPR032675 -
Acco08g1578 917 SUPERFAMILY L domain-like 52 298 - -
Acco08g1578 917 Gene3D Ribonuclease Inhibitor 465 591 IPR032675 -
Acco08g1578 917 MobiDBLite consensus disorder prediction 897 917 - -
Acco08g1578 917 ProSiteProfiles Protein kinase domain profile. 673 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1578 917 SMART LRR_typ_2 102 126 IPR003591 -
Acco08g1578 917 SMART LRR_typ_2 447 471 IPR003591 -
Acco08g1578 917 SMART LRR_typ_2 399 423 IPR003591 -
Acco08g1578 917 SMART LRR_typ_2 544 569 IPR003591 -
Acco08g1578 917 SMART LRR_typ_2 280 303 IPR003591 -
Acco08g1578 917 Pfam Protein kinase domain 674 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1578 917 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Acco08g1578 917 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 279 595 - -
Acco08g1578 917 FunFam Nuclear pore complex protein NUP107 29 172 - -
Acco08g1578 917 Gene3D Ribonuclease Inhibitor 175 366 IPR032675 -
Acco08g1578 917 SUPERFAMILY RNI-like 248 579 - -
Acco08g1578 917 Gene3D Ribonuclease Inhibitor 116 174 IPR032675 -
Acco08g1578 917 SMART serkin_6 673 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1578 917 PRINTS Leucine-rich repeat signature 447 460 - -
Acco08g1578 917 PRINTS Leucine-rich repeat signature 426 439 - -
Acco08g1578 917 FunFam Leucine-rich repeat receptor protein kinase MSP1 635 754 - -
Acco08g1578 917 ProSitePatterns Protein kinases ATP-binding region signature. 679 702 IPR017441 GO:0005524
Acco08g1578 917 Pfam Leucine rich repeat 328 388 IPR001611 GO:0005515
Acco08g1578 917 Pfam Leucine rich repeat 425 483 IPR001611 GO:0005515
Acco08g1578 917 Gene3D Transferase(Phosphotransferase) domain 1 755 903 - -
Acco08g1578 917 Gene3D Phosphorylase Kinase; domain 1 636 754 - -
Acco08g1578 917 PANTHER LEUCINE RICH REPEAT KINASE 2 194 883 - -
Acco08g1578 917 FunFam Leucine-rich repeat receptor protein kinase EMS1 181 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1578 Acco-ChrAcco08 21124049 21127077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1578 99 874 Receptor kinase-like Gene Family AT4G08850 44.543 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco08g1578 Pkinase 1.8e-41 CL0016