LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g1564	ATGGACGAGCATAGAACTGATGCTCGCCTTGCAGGTCAAGCCATATGTGTGGTTTTCTTGGCATTTTGTGCAGTAACTTTTGGAGAGACAGAAACAGAGGCCCTTCTCAGGTGGAAAGAAAGTCTTCCAGATCAACCAATTCTGGAGTCATGGGTCTCCCCAGCACAGAACTCAAGTGCAGCTCAAAGCCCATGTTCATGGCTTGGAATAACATGTGATAATTCCTCAGGAAGTGTAATTGCAATAAACTTGGCTTACACTGGTCTTCAAGGTACCCTCCAAAACTTGAACTTCTCCGCATTTCCAAATCTTCTCCGCCTTGACCTCAAAACAAACAACCTCATCGGTAGAATACCAGAAAACATTGGTGTGCTTTCTAAACTGCAATACCTTGATCTTTCCACAAATTACCTCAACGGCATTTTACCTCTTTCTCTTGCTAATTTGACTCAAGTTTACGAGTTTGATGCTTCACGAAACAATATTACTGGAATATTAGACCCTCGTCTTTTCCCTGATGGTTCTGATCAGCCCAAGACTGGATTGATAGAAATCAGAAATCTTCTCTTTCAGGACACCCTTCTTGGTGGTAGCATCCCAGATGAAATAGGATATACAAGAAATTTAACCGTGCTAGCTTTAGATGGGAATAGCTTCTATGGACCTATTCCCCCATCTCTAGGGAACTGTACACATTTAAGTGTTCTTAGGATGTCTGGAAACCAACTTTCAGGCATGATTCCTCCTAGTTTTGGTAGATTGACTAATCTATCCCAGGTGTTCCTCCACGTAAATAATTTACAGGGTCCTGTGCCACAAGAATTAGGAAACTCTTCTTCTTTAATTGTCCTGCATCTTGCTGAGAACAACTTCACTGGAGACTTACCACCACAAGTTTGCAAAGGTGGCAAGCTTGTAAATTTCAGTGCTTCCTACAATAGTTTCACTGGTCCAATCCCAATAAGCCTGAGAGATTGCCCATCCTTGTATAGGGTTCGGATGGAATATAATCAATTAAGGGGTTATGCAGATCAAGATTTTGGAGTGTATCCTAATCTTACTTACATGGACTTCAGCTACAATAACGTGCAAGGTGAGCTCTCTTCAAATTGGGGAAGCTGCAAAAAATTGCAGTACCTTGGTATGTCTGGAAATTCAATAGGCGCCTTACAAGATTTGTTGGACTTGAGTTACAATTCACTTTCTGGTCAAATTACAGATGATCTTAGCAAGCTGAAAAATTTGATCAGCTTGAACATCTCTCACAACAATCTATCTGGGTCTATCCCAGACTCCCTTGGTGAAATGTTGAGTTTGTCAAGCATCAATCTCTCCAACAACAATTTGGAGGGTCATGTACCCAATACTGGCATATTTAATTCTTCTAATCCAGTGGATTTACACAACAACAAAGATTTATGTGGGAATATACAAGGCCTACAACCTTGCAATGTCTCATACATGGAACCTGGAGGTGGAAGCAACAAAAAGAAAGTTATAGCAGCCATTGTTGCTTCTTTGGGAGGCGCACTGCTTGTTTCATCATTGTTAGTTTGCATTTTTGTTTTCAGCTGCACATATGGCTATGCGGCGCCAGAGCTTGCATACACAAAGGCAGTGACTGAAAAATGTGATGTGTTTAGCTTTGGTGTTTTGGCTTTTGAGATTCTCACAGGAAAGCATCCAGGAGATCTAATTTCTTACATTCAAGCATATGGTGTTCAAAACTTCAACTTCAAAGATATTTTAGATCCACGTCTTTCACCTCCTACAAAGCAAGAAACATTGAAGGAATTGGCATTGATTAGTAATCTGGCTATTTCTTGTTTACAAAGCAACTCTCAATCACGACCAAGTATGCGAAGCTTAACTCACTTGATTGAAATGGAGACAGCTCAAGATTCATGA	1908	0.4072	MDEHRTDARLAGQAICVVFLAFCAVTFGETETEALLRWKESLPDQPILESWVSPAQNSSAAQSPCSWLGITCDNSSGSVIAINLAYTGLQGTLQNLNFSAFPNLLRLDLKTNNLIGRIPENIGVLSKLQYLDLSTNYLNGILPLSLANLTQVYEFDASRNNITGILDPRLFPDGSDQPKTGLIEIRNLLFQDTLLGGSIPDEIGYTRNLTVLALDGNSFYGPIPPSLGNCTHLSVLRMSGNQLSGMIPPSFGRLTNLSQVFLHVNNLQGPVPQELGNSSSLIVLHLAENNFTGDLPPQVCKGGKLVNFSASYNSFTGPIPISLRDCPSLYRVRMEYNQLRGYADQDFGVYPNLTYMDFSYNNVQGELSSNWGSCKKLQYLGMSGNSIGALQDLLDLSYNSLSGQITDDLSKLKNLISLNISHNNLSGSIPDSLGEMLSLSSINLSNNNLEGHVPNTGIFNSSNPVDLHNNKDLCGNIQGLQPCNVSYMEPGGGSNKKKVIAAIVASLGGALLVSSLLVCIFVFSCTYGYAAPELAYTKAVTEKCDVFSFGVLAFEILTGKHPGDLISYIQAYGVQNFNFKDILDPRLSPPTKQETLKELALISNLAISCLQSNSQSRPSMRSLTHLIEMETAQDS	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g1564	635	Gene3D	Ribonuclease Inhibitor	27	172	IPR032675	-
	Acco08g1564	635	ProSiteProfiles	Leucine-rich repeat profile.	376	397	IPR001611	GO:0005515
	Acco08g1564	635	ProSiteProfiles	Leucine-rich repeat profile.	127	148	IPR001611	GO:0005515
	Acco08g1564	635	PANTHER	LEUCINE RICH REPEAT KINASE 2	187	388	-	-
	Acco08g1564	635	Coils	Coil	626	635	-	-
	Acco08g1564	635	PRINTS	Leucine-rich repeat signature	128	141	-	-
	Acco08g1564	635	PRINTS	Leucine-rich repeat signature	412	425	-	-
	Acco08g1564	635	SUPERFAMILY	RNI-like	82	468	-	-
	Acco08g1564	635	Pfam	Leucine rich repeat N-terminal domain	30	73	IPR013210	-
	Acco08g1564	635	FunFam	Nuclear pore complex protein NUP107	28	171	-	-
	Acco08g1564	635	Pfam	Protein tyrosine and serine/threonine kinase	528	625	IPR001245	GO:0004672\|GO:0006468
	Acco08g1564	635	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	180	389	-	-
	Acco08g1564	635	SUPERFAMILY	Protein kinase-like (PK-like)	516	625	IPR011009	-
	Acco08g1564	635	Gene3D	Transferase(Phosphotransferase) domain 1	497	634	-	-
	Acco08g1564	635	Gene3D	Ribonuclease Inhibitor	253	488	IPR032675	-
	Acco08g1564	635	Gene3D	Ribonuclease Inhibitor	173	252	IPR032675	-
	Acco08g1564	635	Pfam	Leucine Rich Repeat	414	434	IPR001611	GO:0005515
	Acco08g1564	635	Pfam	Leucine Rich Repeat	127	149	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g1564	Acco-ChrAcco08	20438694	20441865	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g1564	107	605	Receptor kinase-like Gene Family	AT4G08850	29.982	8.61e-60	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Acco08g1564		PK_Tyr_Ser-Thr	1.4e-09	CL0016