LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g1520	ATGGAATCCAGATTGGGGTTTCCACTTCTCTTCTTCTCGTTATTCTCTATCTGTTTCAAAGCAGAATCAAAATGTAGCAAAGGATGCGACCTAGCTCTTGCCTCCTACTATGTTTGGGTCGGATTTTCAAATCTCACGACCCTTTCACAAATTATGCAATCCCCAATTCTTCAAAACCCTCAAGATATCGTCAACTATAACAAAGATCATCTATCTAGCATAGATTATGTCCAAACCACAACTCGCGTGAACGTTCCGTTCCCTTGCGATTGCATCGGCGGTGAATTTCTAGGTTACGCATTCAAGTACCCGATTCAAGAAGGGGATAATTATGTGAAGGTGGCGAATCAGAGCTATTCGAATCTCACCACTGCTTCGTGGTTGCTGAGCTTGAATAGCTATCCGCCGAATAATTTTCCTAATTCTGGAACGCTGAATGTGACGATGAACTGTTCGTGTGGGGATAGCCATGTTTCAAAAGATTATGGGTTGTTCATCACTTACCCGCTAAGAGCTGGGGATTCTTTGGATTCAATTGCTAACCAGACGAATCTTGATCGATCGTTGTTGCAGAGGTATAATCCTGGTGTTGATTTTAGCAAAGGGAGTGGTGTGGTTTATATCCCGGGGAAAGGTACACTAATTTATTCGATGTCGCGTCTAAAAGGTATGGCTATTGCTGGAGTATCTGCTGGGGCAGTAGTTGGGGTTCTGTTATTAACAGTTTGTCCTTATCTTGTGTATTACCGAAGGAAGAAGGAGGAAGAGGAAAAATTGCTTTCAGAATTAGCAGTATACTCTGCTCAATCTGGGAAGGATTCCGATGGTTCTTCGGCTGCTGTTCATACTAGCATCAAAGGCATTATTGTGGACAAATCAGTGGAGTTCTCATATGAAGAACTAGCTCAAGCCACAAATGACTTCAGTATGTTACATAAAATTGGTCAAGGTGGTTTTGGGGCTGTCTACTATGCGGAGCTGAGAGGCGAGAAAGTTGCAATAAAAAAGATGGAGTCACAAAAATCAAGGGAGTTTCTTGCTGAATTGAAAGTGTTAACGCATGTTTATCACCTAAACCTGGTGCGTTTGATTGGATATTGTGTTAATAAGGATTGTCTTTTCCTGGTATATGAATATATTGACAATGGAAACTTAAGTCAACACCTGCGAGATTCAGGGAGAGAACCTTTGCCATGGTCCATGCGGGTGCAAATTGCTCTAGATTCAGCCAGAGGTCTTGAATATATTCACGAGCATACTGTGCCTGTATATATTCATCGTGACATAAAGTCAGATAATATATTGATAGACCGAAACTTCCATGCCAAGGTTGCAGATTTTGGGTTGACCAAGCTCACTGAAGTGGGAGCTTCGGCTCCTCCCACTGATAATCTTGCAGGCACATTTGGTTATATGGCACCTGAATATGCATATGGTAGTGTTTCACCAAAAATTGACGTCTTTGCTTTCGGAGTTGTCCTCTATGAACTTATATCTGCTAAAGAAGCTTTGCTCAGGGCTAGTGAATCTTGTTCTGATACAAAAGGCCTTGTCTCTTTGTTTGAAGAAGCTCTTGGGAAGAATAATCCAAAGGAACATCTTCAAAAGCTTGTTGATCCTAGGCTCGGTGGTCAATACACAATCGATTCAATTTACAAGATTGCACAGCTAGCCAAAGTGTGCACAGATGGCGACCCAGACCGACGTCCAAGTATGAGATCTGTTGTGGTGACTCTGATGACACTTTATTCTACTTCTGTGGAATGA	1767	0.4205	MESRLGFPLLFFSLFSICFKAESKCSKGCDLALASYYVWVGFSNLTTLSQIMQSPILQNPQDIVNYNKDHLSSIDYVQTTTRVNVPFPCDCIGGEFLGYAFKYPIQEGDNYVKVANQSYSNLTTASWLLSLNSYPPNNFPNSGTLNVTMNCSCGDSHVSKDYGLFITYPLRAGDSLDSIANQTNLDRSLLQRYNPGVDFSKGSGVVYIPGKGTLIYSMSRLKGMAIAGVSAGAVVGVLLLTVCPYLVYYRRKKEEEEKLLSELAVYSAQSGKDSDGSSAAVHTSIKGIIVDKSVEFSYEELAQATNDFSMLHKIGQGGFGAVYYAELRGEKVAIKKMESQKSREFLAELKVLTHVYHLNLVRLIGYCVNKDCLFLVYEYIDNGNLSQHLRDSGREPLPWSMRVQIALDSARGLEYIHEHTVPVYIHRDIKSDNILIDRNFHAKVADFGLTKLTEVGASAPPTDNLAGTFGYMAPEYAYGSVSPKIDVFAFGVVLYELISAKEALLRASESCSDTKGLVSLFEEALGKNNPKEHLQKLVDPRLGGQYTIDSIYKIAQLAKVCTDGDPDRRPSMRSVVVTLMTLYSTSVE	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g1520	588	CDD	LysM	166	198	IPR018392	-
	Acco08g1520	588	FunFam	PTI1-like tyrosine-protein kinase 3	380	588	-	-
	Acco08g1520	588	SMART	serkin_6	308	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g1520	588	SUPERFAMILY	Protein kinase-like (PK-like)	288	579	IPR011009	-
	Acco08g1520	588	Gene3D	Transferase(Phosphotransferase) domain 1	380	587	-	-
	Acco08g1520	588	ProSitePatterns	Protein kinases ATP-binding region signature.	314	336	IPR017441	GO:0005524
	Acco08g1520	588	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	424	436	IPR008271	GO:0004672\|GO:0006468
	Acco08g1520	588	ProSiteProfiles	Protein kinase domain profile.	308	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g1520	588	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	9	586	IPR044812	GO:0019199\|GO:0045087
	Acco08g1520	588	Pfam	Protein tyrosine and serine/threonine kinase	310	578	IPR001245	GO:0004672\|GO:0006468
	Acco08g1520	588	Gene3D	Phosphorylase Kinase; domain 1	280	379	-	-
	Acco08g1520	588	FunFam	LysM receptor kinase 2	287	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g1520	Acco-ChrAcco08	19106502	19113725	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g1520	8	586	Receptor kinase-like Gene Family	AT3G21630	54.941	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Acco08g1520		PK_Tyr_Ser-Thr	6.4e-46	CL0016