Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1505 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAACAGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTTCACTCATCGTCTTCTCCAATCGCGGTCGTCTCTATGAGTACTCCAACAACAACATAAGGTCAACTATTGAGAGGTATAAAAAGGCATGTTCAGACTATTCAAGTATCCCCACTACTACTGAAATCAATGCCCGGTATTATCAACAAGAATCTGCAAAGCTACGACAACAGATTCAAATGCTGCAAAGTTCTAACAGGCGCTTGATGGGTGATGCCTTGAGCACTCTGAATGTGAAGGAGCTCAAGCAGCTTGAGAATAGACTTGAACGAGGACTCTCTCGAATAAGGTCCAAAAAGCATGAGATGCTGCTGACAGAAATCGAATACATGCAGAAGAAGGAGCTTCAACTTGAAAATCAAAACCTTTGTATTCGGACTAAGATAGCACAAGTGGAGAGGGCAGAAGAAGAAGATCAGATGGTATCTGGAAGAGGACAAGAGCTGAGTGCCCTCCAGGCTTTGGCTTCTCGAAATTACTTCATTCATACTACTTCATCACCTAATGACAACAATAATCTTCGTCTTGGGCTCTTGGGTCCCACCTGCAGTAGGTGTTGTCCTATTGGCTTTTAG 702 0.4345 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKACSDYSSIPTTTEINARYYQQESAKLRQQIQMLQSSNRRLMGDALSTLNVKELKQLENRLERGLSRIRSKKHEMLLTEIEYMQKKELQLENQNLCIRTKIAQVERAEEEDQMVSGRGQELSALQALASRNYFIHTTSSPNDNNNLRLGLLGPTCSRCCPIGF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1505 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Acco08g1505 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco08g1505 233 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Acco08g1505 233 Coils Coil 121 144 - -
Acco08g1505 233 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco08g1505 233 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Acco08g1505 233 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco08g1505 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Acco08g1505 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco08g1505 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1505 Acco-ChrAcco08 18561051 18574000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1505 1 206 MADS-box Gene Family AT4G09960 74.879 1.69e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco08g1505 K-box 4.1e-25 No_clan