Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1462 ATGCCTACATCAGTTCTTGATGGTCAGTCTGGAGAAAAATTGCTTCGGAAGTCATTTGCAATTCGTGATTACCCGCCTGGGGTTGGACCAAATGCTGCAAGATTCCATGTTAAAGCTAAACAAGATATTGCTGAGGGTGGTGAGGCTAATCTTCAACACTCTGCCACTAGAAGATTTGTTTCTGCTATTAGAGACTATCCTCCTTTCTGTGGACGTAATTCTCGGGGAGTGAGTAAGGCAGATGTTTCCAAGCTCATGCAGAGGCATTTGACTGGTGTTAGGGAAGAAAGTAAGAGAAAACTTGATTGCCGCACACAGGGTGATGGATCTAAAGCCGTGACGAGGACTAAAGACTCTCTGAATCATTCCAACATGAAGGTTTTAAAAAAGAAAGAAGGAAATGCTGCTTCTGGAGCTATGGGTAGACTTGTAGTCATAGGAAAAAATGGTCGTGATATCAATTATAGCAGAAAATTTTCTGATGGCCACAGATCATATTGTTCTAATGTAAATGTTCCACTTCTATGTCGTGATAATTTGAGTAGAGGCAACAGTGAAACAGATGTCACCCGAAATACTGTGAGGGACATAATGCGCTGTTTCCAAGCTGTTAGTAGAAAATTGTTGCAAGAAGAAGAAGCAAAGTTAAAAGGCAAAGCAAAAATTCGTAGGAGGATTGATTTAGAGGCAGCAAAGATACTTAAAAAGGAAGGAAAATATATTAATGAAGGTAAGATCTTTGGTTCTGTTCCTGGGGTAGAAATAGGTGATGAGTTTGACTATAGGGTGGAGCTTAATTTAGTCGGTCTTCATCGCAATATACAGGCTGGCATAGATTATGCAATGTGCAATGGTGAGCATCTTGCAACTAGTATTGTTGCATCAGGGGGATACCATGATGAGTTGGATAATTCAGGTGTTTTGATTTATTCAGGGCACGGGGGGAATGTGATGTCCAAAAAGAAAGAACCTGAAGATCAGAAGCTTGAACGAGGTAATCTTGCTTTGAAGAATAGTAGCAAGAAAAAGAATCCTGTTAGAGTGATACGTGGTGCTTTCTTTGGAGGTGGAAGTCGTAGGACATTTGTGTATGATGGATTGTATGAAGTTGAGTCATACTGGCAAGAAAGGGGGCCACATGGCAAGATGGTTTTCAAGTTTCAGCTACGAAGAATCCCAAACCAACCCGAGCTTCCTTGGATTGAACTGAAGAATTCCAACGCGTTCACATTAAGGAAGGGCTTGTGCGTTGCTGACATCTCACATGGTAAAGAGGCATTACCAATTCGTGCTGTGAATACCAAAGACCATAAAAAACCACCATCGTTTGAATATATCACAAGGATGATCTACCCTGGTTGGTTGCAGCCAATACCTTCTAAGGGATGTAACTGTACGGACAGATGCTCTGACCCTACCAGATGTTCTTGTGCTGTTAGAAATGGAGGAATCCCATTCAATCACACAGGATGTATTGTAGAAGAAAAGTCTCTAGTCTATGAGTGTGGTCCTTCTTGCAAATGCCCTCCAGATTGCTATAGCAGAGTCAGCCAACATGGCATAAAATTGCCACTTGAAATTTATAAAACTGAAAAAAGGGGATGGGGTGTGAGATCTCTACGCTCCATCCCTTCTGGAAGTTTTGTATGTGAATACATAGGAGAGTTGCTTGAAGACAAGCAAGCTCAGAAGAGAACTGGTCTTGATGAGTATCTGTTTGACATAGGTAATAACTTGATAAATAATGGTATACTTTCTGATGGAGTCTCCAGGCCTGAAGTCTTTGAGGGTGGTGGTGGTTTGACCATTGATGCAGCTCGGAATGGTAATCTGGGCAGATTCTTCAACCATAGTTGCGCCCCTAATATGTATGTACAAAATGTTTTGTATGATCATGGCGACCACAGGATTCCTCACATAATGCTGTTTGCCGCTGAGAACATTCCTCCAATAAAAGAGCTGACTTATGATTACAATTACTCAAAAAATCAAATCTTCAATTCTGACGGCAGCCTAAAGAAGGAGGATTGCTTTTGTGGCTCTGTGGGATGCACTGGAACGATGTATTGA 2070 0.415 MPTSVLDGQSGEKLLRKSFAIRDYPPGVGPNAARFHVKAKQDIAEGGEANLQHSATRRFVSAIRDYPPFCGRNSRGVSKADVSKLMQRHLTGVREESKRKLDCRTQGDGSKAVTRTKDSLNHSNMKVLKKKEGNAASGAMGRLVVIGKNGRDINYSRKFSDGHRSYCSNVNVPLLCRDNLSRGNSETDVTRNTVRDIMRCFQAVSRKLLQEEEAKLKGKAKIRRRIDLEAAKILKKEGKYINEGKIFGSVPGVEIGDEFDYRVELNLVGLHRNIQAGIDYAMCNGEHLATSIVASGGYHDELDNSGVLIYSGHGGNVMSKKKEPEDQKLERGNLALKNSSKKKNPVRVIRGAFFGGGSRRTFVYDGLYEVESYWQERGPHGKMVFKFQLRRIPNQPELPWIELKNSNAFTLRKGLCVADISHGKEALPIRAVNTKDHKKPPSFEYITRMIYPGWLQPIPSKGCNCTDRCSDPTRCSCAVRNGGIPFNHTGCIVEEKSLVYECGPSCKCPPDCYSRVSQHGIKLPLEIYKTEKRGWGVRSLRSIPSGSFVCEYIGELLEDKQAQKRTGLDEYLFDIGNNLINNGILSDGVSRPEVFEGGGGLTIDAARNGNLGRFFNHSCAPNMYVQNVLYDHGDHRIPHIMLFAAENIPPIKELTYDYNYSKNQIFNSDGSLKKEDCFCGSVGCTGTMY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1462 689 Pfam SET domain 534 659 IPR001214 GO:0005515
Acco08g1462 689 Pfam Pre-SET motif 420 515 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco08g1462 689 ProSiteProfiles Pre-SET domain profile. 461 520 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco08g1462 689 SMART G9a_1 243 395 IPR003105 -
Acco08g1462 689 SUPERFAMILY SET domain 406 666 IPR046341 -
Acco08g1462 689 SMART preset_2 417 507 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Acco08g1462 689 Gene3D - 230 412 IPR036987 -
Acco08g1462 689 SUPERFAMILY PUA domain-like 230 404 IPR015947 -
Acco08g1462 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 111 689 IPR025794 GO:0016571
Acco08g1462 689 ProSiteProfiles SET domain profile. 523 659 IPR001214 GO:0005515
Acco08g1462 689 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 100 681 - -
Acco08g1462 689 ProSiteProfiles YDG domain profile. 248 391 IPR003105 -
Acco08g1462 689 ProSiteProfiles Post-SET domain profile. 673 689 IPR003616 -
Acco08g1462 689 Gene3D SET domain 413 689 IPR046341 -
Acco08g1462 689 Pfam SAD/SRA domain 247 395 IPR003105 -
Acco08g1462 689 SMART set_7 523 665 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1462 Acco-ChrAcco08 17833630 17835699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1462 191 688 Su(var)3-9 homologs AT5G04940 39.423 2.74e-108 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco08g1462 SAD_SRA 2e-49 CL0178