Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1446 ATGAGTTGCAGCTCCGGCGACAACAATGGAAGCAGCAGCATCAGAAACATGGACAGCGGTGCCGTCAGGTATAAGGGAGTCCGGCGAAGGAAATGGGGCAAGTGGGTGTCGGAGATTCGAGTCCCGGGGTCACAAGAGCGCCTTTGGTTGGGTACTTATGCATCGCCGGAGGCGGCCGCGGTGGCTCACGACGTGGCTTACTACTGCCTGAGGAGACCGGCGACATTGGAAAAGCTAAACCTGCCGGAGATGTTGCCTTCTTGTTATGTTGGGGAGCAACGGGAAATGTCGCCGAGGTCGGTGCAGGAGGCGGCGTCAAACGCCGGCATGGCAGTTGATGCGCAGAGGATTTTAGAAGCACAAGAGAAGAATGAGAAAACCGATGAGCATCACAGAGAAAACAGAGACATAAATGATGGGTTTTGGTGGGACTGGAATGATGACAGCAGCGGTGGAAGCGGCAGTAATGACGGCTGTTTGTGGCAAGGAATCGCCGGGCAGGGAGGAGAAACAACGAGCATTTCCGTTGATGATTATTTTGTAGATGAGCAACGTTATTAG 561 0.5383 MSCSSGDNNGSSSIRNMDSGAVRYKGVRRRKWGKWVSEIRVPGSQERLWLGTYASPEAAAVAHDVAYYCLRRPATLEKLNLPEMLPSCYVGEQREMSPRSVQEAASNAGMAVDAQRILEAQEKNEKTDEHHRENRDINDGFWWDWNDDSSGGSGSNDGCLWQGIAGQGGETTSISVDDYFVDEQRY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1446 186 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Acco08g1446 186 ProSiteProfiles AP2/ERF domain profile. 23 82 IPR001471 GO:0003700|GO:0006355
Acco08g1446 186 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Acco08g1446 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 128 - -
Acco08g1446 186 SUPERFAMILY DNA-binding domain 23 76 IPR016177 GO:0003677
Acco08g1446 186 SMART rav1_2 23 88 IPR001471 GO:0003700|GO:0006355
Acco08g1446 186 Gene3D AP2/ERF domain 22 83 IPR036955 GO:0003700|GO:0006355
Acco08g1446 186 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Acco08g1446 186 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1446 Acco-ChrAcco08 17561523 17562083 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1446 23 114 AP2-EREBP Transcription Factor Family AT1G22810 63.043 3.67e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco08g1446 AP2 8.9e-11 CL0081