Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1440 ATGGGGTGCCTCTGCTCAAAAGACAAGAATGAAGTTGATGAATGTGATAAAGAAGAAGACTTTGCCAAGTCTTCATCAGTGCAACTGGTCCCTCCTGCTCTCTCAACAGCCCAGTTGGGTGGTGGTGCGGACACTGATGGCTCGGTGAATAGGCTGCTAAAGAAATATTCACATGCAAATGTAAAAAATCATAGTGTAGTTGATGCAAAACCAATAAAAGGTCAATATCCGAGACCTGCATCGTTTGATGCTAGTGTTGGAGAAGGGAAGGGATGGATGTCTCGAATACTTAGCATGTCAAAGGGTTCAGAAGCAGAACATGTTGCTGCAGGATGGCCATTGTGGTTATCTTCAGTAGCAGGAGATGCTATCAAAGGGTTGGTTCCTCGACAGCTAGACTCTTTCGAGAAGTTAGGCCAAGTGGGGCAAGGTGCTTATAGCAGTGTACATAAGGCTCTTGATTTACTTACTGGTAAAATTGTGGCATTGAAGAAAGTGCGTTTTTCACCTTCAGATGCTGAAAGTGTTCGGTTTATGGCTAGGGAAATCTATATTTTGCGCCAACTTGACCATCCAAATGTCATGAAGCTTGAGGGTATTGTGACATCAAGGACATCCAGCAGCTTGTATCTTGTCTTCGAGTACATGGAACATGACCTTGCTGGGTTAGAAGCGTTGCCTGGTATGAAGTTCACTGAATCTCAGATAAAATGTTATATGAAGCAATTGCTTTGTGGGCTTGAACACTGCCATAGTCATGGTGTACTACACCGTGACATCAAGGGTTCAAATCTGCTGCTTAACAGTGAGGGAATTCTTCAGATTGGGGACTTTGGTCTTTCAACTATTTACCAAACTGATAACGGTAACAAGGAGCCATTGACTAGCCGTGTCGTGACTCTGTGGTATAGACCGCCTGAGCTCTTACTTGGTGCTACAGATTATGGACCCGCAGTTGACTTGTGGAGTGCTGGTTGCATTCTAGCAGAATTGCTTGTTGGGAAGCCTACTATGCCAGGAAGAACAGAAGTTGAACAAATGCATAAGATTTTTAAGCTCTGTGGTTCCCCAAGTGAAGAGTTTTGGCAGAAAACAAAATTGCCCCATGCAACAAGTTTTAAACCTCAGAGACAATACAGACGCCGTGTTTCTGAAACATTTAAAGACTTTTCTCCTTCAGCCCTGGCTCTTGTCGAAAAGCTCCTTGCAATAGAACCAGAAGGTCGAGGCTCAGCAACTTCTGCTCTTCAGAGTGAGTTCTTCACAACACCGCCCCTACCTTGTGATCCATCAAGTTTACCAAAGTTTCCTCCTAGCAAGGAGTATGATGCCAAGCTTAGAGATGAGGAAGCAAGAAGGAAAAACACTGAAGCTGTAAAAAGACATGAACCAGTATCTGTTGCAAGAGGTGCAAGAGATACAAATGCTCTCCGATCGCCAGAGTATAACACTAAAGGAAATTTATCTGTACAGGTTAGTTCAAATGCAAAATCGTCTAGTGGCAAATATACCTCCAGTGAGGATGGTAGTTCCCACTTCAGGATTCTGCCAGGCAGAGGTTCTGTACAAAACAGTTATGATCATCCTACTTGGGGGAGACAAATCGCTGCAATGGGGTCACCATTGAATAAGAGATCAGATTCCAGGGAGAAGAATAAAGAGTTAAGGACACAGAGATCTAATGTAAACCAGGCAGCCGCAGATTTTTCTAACTCTTATATAAACAAGGGTTACGTGCCCAAGAAAAATAGGATGCACCACTCTGGACCATTGGTGCCTCCAGGAGCTAACATCGATGACATGCTCCGAGAGCACGAGAGATTAATGCAGGAGGCATTCCGTACTGTCAAGGACAAGAACAACCATAAAAAATACCTGTAA 1881 0.4386 MGCLCSKDKNEVDECDKEEDFAKSSSVQLVPPALSTAQLGGGADTDGSVNRLLKKYSHANVKNHSVVDAKPIKGQYPRPASFDASVGEGKGWMSRILSMSKGSEAEHVAAGWPLWLSSVAGDAIKGLVPRQLDSFEKLGQVGQGAYSSVHKALDLLTGKIVALKKVRFSPSDAESVRFMAREIYILRQLDHPNVMKLEGIVTSRTSSSLYLVFEYMEHDLAGLEALPGMKFTESQIKCYMKQLLCGLEHCHSHGVLHRDIKGSNLLLNSEGILQIGDFGLSTIYQTDNGNKEPLTSRVVTLWYRPPELLLGATDYGPAVDLWSAGCILAELLVGKPTMPGRTEVEQMHKIFKLCGSPSEEFWQKTKLPHATSFKPQRQYRRRVSETFKDFSPSALALVEKLLAIEPEGRGSATSALQSEFFTTPPLPCDPSSLPKFPPSKEYDAKLRDEEARRKNTEAVKRHEPVSVARGARDTNALRSPEYNTKGNLSVQVSSNAKSSSGKYTSSEDGSSHFRILPGRGSVQNSYDHPTWGRQIAAMGSPLNKRSDSREKNKELRTQRSNVNQAAADFSNSYINKGYVPKKNRMHHSGPLVPPGANIDDMLREHERLMQEAFRTVKDKNNHKKYL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1440 626 CDD STKc_CDK9_like 135 421 - -
Acco08g1440 626 Pfam Protein kinase domain 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1440 626 SUPERFAMILY Protein kinase-like (PK-like) 130 429 IPR011009 -
Acco08g1440 626 Gene3D Transferase(Phosphotransferase) domain 1 223 461 - -
Acco08g1440 626 Gene3D Phosphorylase Kinase; domain 1 129 222 - -
Acco08g1440 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Acco08g1440 626 SMART serkin_6 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1440 626 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Acco08g1440 626 PANTHER CELL DIVISION PROTEIN KINASE 133 427 - -
Acco08g1440 626 MobiDBLite consensus disorder prediction 477 511 - -
Acco08g1440 626 FunFam probable serine/threonine-protein kinase At1g54610 218 461 - -
Acco08g1440 626 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1440 626 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Acco08g1440 626 MobiDBLite consensus disorder prediction 420 557 - -
Acco08g1440 626 MobiDBLite consensus disorder prediction 440 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1440 Acco-ChrAcco08 17452355 17456736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1440 130 469 Core Cell Cycle Gene Families AT5G10270 51.524 6.31e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Acco08g1440 Pkinase 2.3e-66 CL0016