Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1419 ATGTTAATGGTGTGGATTCTTTCGAAGAGCAAAATGATGAGGCTACAGTCATATGCGGGGCTTAGTTTCATTGCAACTCTAGCTGTTATATATCATGCATTCCACAGCAGAAGTCAATTTTATCCAGCGATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTAGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTTTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAACGAGTTGAATATATTGAGACCACTCCTACCGTGCCCTTGTTGTCTCACATTCGAATTGTGTCTTTTATGGTTTTCCTCCTCCTTCTTGATGGACTCTTTCTATATAGTTCCATGAAACAATTGATACAAACTTGGCAGGCTTCAGTTTCCCTCTTTTTTGCCTTCGAGTACATGATTCTGGCAACAACAACAGTGTCAATTTTTGTAAAATACCTTTTCTACGTCAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACTTTCTACTTGGAACTCATTAGGGATTTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCGTAAATTATGGTGTGCCTTTGCACTTAATAAGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAAACCCAGAAGAGCTTAATGCAAGTGATCCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGCGGACATTTTTTTCATGTGCATTGCCTCCGGTCATGGTTGGAGCGACAAAATACTTGCCCTATCTGCAGAGCCTTGGTTGTACCGCCTGAAAATGGGGCAACTACTGCTGGAGGACAGCAGGGATCACAGTCAGACCGACAGGGAACAGGAACTGGAACAAGTACTGGAAGCTCAGCTCAAGCTGAAGCGGGCAGTGGGGCGGCTACTGATAATTTGAGTCGTCATCAAGCTAGACTTCGAGCTTTAGCTGCTGCTGCTTCAATGTATGAGAAGTCTTTCGTATACCCATCTGCACCTTCTTTAGCAAGTGCCCCTGGATACACTGTTCATCCTCCTGTTCATAGACCCGCCACTGAATCTTCTAATACGGAACAATATACTTCAAGTGAACAAACACAACGACAGTTTGTCACCCCTTTTGGACCAATGAATGTTTCCTTTCATCCAATGGGACCGTTTCTTTTTCCTCCTCCAACACATGTAACTTATGGGAATTATGGAGAGGGATCTGGATCTGATCCAAATGTGCCAAACGCTCTGCTGGAAGCTCAAAGAATTCAACACCAGATTGAGGTTCTGGAACATCAGCTCCAGATTCTGAAGGCAAGTGTTGAGGAAAATGTAAGTGAGGGCAAGCCATCATCAAGTAGCAAAGGTAAGCAGATTGCTGCTTCATCTGTGTCTGATAATGGCTGTAATGACGAAATTCAACAAATTCAACAAATTCAAGGCGGCATTGTATAA 1698 0.4229 MLMVWILSKSKMMRLQSYAGLSFIATLAVIYHAFHSRSQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMVFLLLLDGLFLYSSMKQLIQTWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDANPEELNASDPTCIICREEMTTAKKLICGHFFHVHCLRSWLERQNTCPICRALVVPPENGATTAGGQQGSQSDRQGTGTGTSTGSSAQAEAGSGAATDNLSRHQARLRALAAAASMYEKSFVYPSAPSLASAPGYTVHPPVHRPATESSNTEQYTSSEQTQRQFVTPFGPMNVSFHPMGPFLFPPPTHVTYGNYGEGSGSDPNVPNALLEAQRIQHQIEVLEHQLQILKASVEENVSEGKPSSSSKGKQIAASSVSDNGCNDEIQQIQQIQGGIV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1419 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 348 IPR013083 -
Acco08g1419 565 ProSiteProfiles Zinc finger RING-type profile. 303 341 IPR001841 -
Acco08g1419 565 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 275 350 - -
Acco08g1419 565 MobiDBLite consensus disorder prediction 351 389 - -
Acco08g1419 565 Coils Coil 501 521 - -
Acco08g1419 565 CDD RING-H2_synoviolin 300 341 - -
Acco08g1419 565 MobiDBLite consensus disorder prediction 526 547 - -
Acco08g1419 565 MobiDBLite consensus disorder prediction 431 451 - -
Acco08g1419 565 MobiDBLite consensus disorder prediction 433 451 - -
Acco08g1419 565 Pfam Ring finger domain 302 341 IPR001841 -
Acco08g1419 565 SMART ring_2 303 340 IPR001841 -
Acco08g1419 565 PANTHER RING ZINC FINGER PROTEIN 2 519 - -
Acco08g1419 565 SUPERFAMILY RING/U-box 283 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1419 Acco-ChrAcco08 17056712 17063976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1419 12 544 C3H Transcription Factor Family AT3G16090 63.636 0.0 650