Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1418 ATGATTTTTCACAATTGCTTCTTACTCTTCTTCCTTATCATTATCTTCCTCTGTTCTACCACCACTGAAGCACGACCTACTTATCTTTACCACAACTGCTCCACTGCCGGCAAAACCTTCGCCGCTAATAGCGTCTTCCAATCCCGCCGGAGCACCCTCCTCTCATCCATAGCCTCTCTCAATGCCGGCTTCGGCAACACCACCGTTCCTGGAGGCGGCAACGACACCATCTACGGCCTCTACATGTGCCGTGGTGACGTCTCCCTCCAGGTGTGCAACCAATGCGTCCTTAACGCAACCCAGCGACTACCTTCCGAGTGCCCGTTTTCCAAGGAGGCCGTGATCTGGTACGACGAGTGCATGCTCCGCTATTCCAACATCTCTTTCTTCTCCACCATCGACCAATGGCCGACAGTCGTCATATTGAACCCGAAGAATATCTCGGTCTCACCCCCAACGGGATTCAGTAATTTTTTGATGAGTTTTATGAATGAGACGGTAAGTATGGTGGCGGCGGCGGTGGATAAACCTGCATCGGAAGCGACGATATATGCGAAGAACCAGAAGAAGTTTCAGTCTGAAACTTTGTATAGTCTAGCTCAGTGCACACCGGACCTACGGCTTCAAGATTGCAGAAGTTGTCTGAGTGGTGTGATTCGGAATATTCCGTTGTGTAGTGATAAGAAGATCGGAGGAAGGGCTGTGAATCCAAGTTGCAACATTCGCTATGAGTTGTTTTCATTTTTTGATCCCAATGAACCAGGCTCGTTGACCCGGTCGCGTCCATTTTTCCATCAACCTGCAGCAAGGATAAGTGCGATAATTGTGGCTTCTCTTGTTGTTGGCGGGATAATATTTTATTTCGCTTACTATCTTCTAAAGATTAGAGTGGAAAAACGTCAAAGGGCTAATCTCAGACAAAAATACTTTGGAAGGGAAAGCACAACTTTAGAGCATCTGCAATTTGGTCTAGCTACAATTGAGGCTGCGACAAATAAGTTTTCTCATGAAAATAGATTAGGGAGAGGTGGATTTGGACAAGTTTTCAAGGGTGTTCTTCCAAATGGACAAGAAATAGCAGTGAAGAGACTTTCGAAAGGTTCTGGCCAAGGTGCAGAAGAGTTTAAGAACGAGGTTTTATTGATAGCTAGACTCCAGCACAGAAATTTGGTGGCGTTACTAGGATACTGCATTGAAGAGCAAGAAAAACTACTTGTTTATGAATATGTTGCTAACAGAAGCCTTGATTACTTTTTATTTGGTTCCCAAAATACTAGAGTGTTAGATTGGATGGAGCGTAGCAAAATCATAGGAGGAGTTGCTCGAGGAATTCTTTATCTTCATGAATATTCTCGACTAAAAATCATACATCGAGATCTCAAACCTAGCAATATTTTGGTAGATGATGAAATGAATCCAAAAATTTCAGATTTTGGCCTAGCTAAGATGGTTGCTGTTAGTGAAAATGAGGGAAGTACGAATCGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATATTCTGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAGTTTTAGAAATTATCAGTAGAAAGAAGAATACAGGATGTCATGATTCTCAATATGCTGATGGCCTCTTAAGCTATACATGGAAGAAATGGAGGGATGACAAGTTGGTAGAGATATTGGATTCAAATATAAATGAATTGGGATCATACAATGAAGTGCTCAGGTGCATCCAAATTGGATTGTTATGTGTTCAAGAAAATCCAAATGCAAGGCCTTCCATGGCTAGGGTTGTTTCATATCTTACCAATGATTCTATTCAATTGCCTTTACCCCAGGAACCTGCTTTCTTTTTGCATGGTCATCAACCACAGCCTATTATCTCCAATAATGGAAGTGGAGAGTCATGCTCTGTTAATGAAGCTTCTATGAGTGAATTCTTTCCTCGCTAG 1962 0.423 MIFHNCFLLFFLIIIFLCSTTTEARPTYLYHNCSTAGKTFAANSVFQSRRSTLLSSIASLNAGFGNTTVPGGGNDTIYGLYMCRGDVSLQVCNQCVLNATQRLPSECPFSKEAVIWYDECMLRYSNISFFSTIDQWPTVVILNPKNISVSPPTGFSNFLMSFMNETVSMVAAAVDKPASEATIYAKNQKKFQSETLYSLAQCTPDLRLQDCRSCLSGVIRNIPLCSDKKIGGRAVNPSCNIRYELFSFFDPNEPGSLTRSRPFFHQPAARISAIIVASLVVGGIIFYFAYYLLKIRVEKRQRANLRQKYFGRESTTLEHLQFGLATIEAATNKFSHENRLGRGGFGQVFKGVLPNGQEIAVKRLSKGSGQGAEEFKNEVLLIARLQHRNLVALLGYCIEEQEKLLVYEYVANRSLDYFLFGSQNTRVLDWMERSKIIGGVARGILYLHEYSRLKIIHRDLKPSNILVDDEMNPKISDFGLAKMVAVSENEGSTNRIVGTYGYMSPEYAMFGQYSEKSDVFSFGVIVLEIISRKKNTGCHDSQYADGLLSYTWKKWRDDKLVEILDSNINELGSYNEVLRCIQIGLLCVQENPNARPSMARVVSYLTNDSIQLPLPQEPAFFLHGHQPQPIISNNGSGESCSVNEASMSEFFPR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1418 653 SUPERFAMILY Protein kinase-like (PK-like) 318 628 IPR011009 -
Acco08g1418 653 Pfam Salt stress response/antifungal 155 244 IPR002902 -
Acco08g1418 653 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Acco08g1418 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 296 409 - -
Acco08g1418 653 ProSiteProfiles Protein kinase domain profile. 334 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1418 653 CDD STKc_IRAK 340 607 - -
Acco08g1418 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 649 - -
Acco08g1418 653 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Acco08g1418 653 ProSiteProfiles Gnk2-homologous domain profile. 28 129 IPR002902 -
Acco08g1418 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 129 - -
Acco08g1418 653 Pfam Protein kinase domain 335 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1418 653 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Acco08g1418 653 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1418 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Acco08g1418 653 Gene3D Phosphorylase Kinase; domain 1 294 409 - -
Acco08g1418 653 ProSiteProfiles Gnk2-homologous domain profile. 135 248 IPR002902 -
Acco08g1418 653 Gene3D - 138 248 IPR038408 -
Acco08g1418 653 Gene3D - 25 129 IPR038408 -
Acco08g1418 653 FunFam cysteine-rich receptor-like protein kinase 10 410 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1418 Acco-ChrAcco08 17025760 17038261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1418 5 653 Receptor kinase-like Gene Family AT4G05200 43.402 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco08g1418 Pkinase 3.6e-46 CL0016