Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1394 ATGTACACAAGAAGGCTTAAAAGGTTGGAGTCAAGTGTCACATCTATGGATATAAAGAATTCAGACAAAACAAGAGCAGCTAAAGTTTCTGGAAGACGAACAAAAGAAATAACAGGCAAAGAAGATTTATTGGACAAACTGAGGAACGTAGATTTGCCAGAGCAAGAATGGGTCAATAAGATTCCAGAGTGTCCTGTTTTCTGCCCATCAGAACATGAGTTTGAGGATCCTTTAGTTTATCTGCAGAAGATTGCTCCTGAGGCACAAAAATATGGAATGTGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGCTGTTGTCTTAATGAAAGAGATAGGAAATTTCAAGTTTGAAACCATTGTACAACCTCTTGGGTATTCTGAAATGAACAAGGACAAGGAAACAATCTATTCTCTCAGAGGCAGAAAATACACTTATCGTGATTTCGAGACTTTGGCGAACAAGGCATCTCGCGGTCGGTTTTACAGTTTAGGAAGTCCTCCTTCTTCATATCTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGAGATGGGAACAGTTGAATATGGAGTCAATATTGATGGTAGTGCCTTTTCATGTGATCCTCTTGACAAGCTTGGAAAAAGCAAATGGAATTTGAAGAATTTCTCGCGGCTGAGGAAATCTACATTGCAGTTCATTGACAGAAAGATTCCTGGAATAACTGACCCTATGCTTTATATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAATTATCATCACTCTGGAGCAAACAAAACTTGGTACGGCGTTCCCAGTTACGCAGCCTCTCGATTTGAAGAGGTCGCCTTAGATCATGTGTTCCACAATAAGATTTTATCAAAGCACAATGGAGAGGCCGGTGCCTACGAAACTCTCGCTCATAAAACAACCATATTTTCACCAAATGTCCTGCTTCAACATGATGTTCCAGTTTATAAGGCTGTGCAGAAGCCTGGAGAGTTTGTCATCACCTTTCCTAAATCATATCATGCTGGATTTAGTCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCTGTGAGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGGCGATATGCTCTTCTTGGAAAGATGCCTATTATTCCCTTTGAGGAACTTCTTTGTAATGAAGCAATGCTAATTTACAAAGCATCAAATAATCTCAAAGGCTCCTCCAATAAAAAACTCGATTTGGAATCCGACCATGCTACTAAGCTATCTTTTATGCAGCTCATGCGATGTTACGACGAGGCCCTTTCAAGACTGAGAAAAAGTTCAATAGAGTACTCTTCAAGTTCTTCAAATTCTCTTGGCACTGTGGTATGCAGCCTCTGCAGTAGAGACTGTTACGTGGCTTTCTTGCTCTGCAATAAATGCTACTCTCTTCCCATTTGTATTTTCCATGATGAAACTGAGACTCGTAGTTGTTCATGCGGTAGACAATGTACATTTTACAAGAGAGATGAAACGTTGTCTCTGATGGATGCTGCCACAAGTTTTGAACTGGAAAAAGACATTTTGTTAGAAGTTCAAAGACATAGTGGAGCAAATATACTGTCAAAGACATCCTTTTTTACCGATCAAGAAAGCATTCAAGATAATAAGAGCAATCATTGCCATGAAGAAAGAATCCCCAGTGGAACTGTTTCTTCCGTTGTGGAGAGAGCATCGACCTCAAAAATAAGAAAAGAGGACACTATTGAGCTCAACTTGGAAGATAAGAAGAAGCTAGTGCTGAAATTTTGTAGAAAGAGAGAGCCTCCAACAGATGATGAGAAGGGAGCTCAAGAGAAGTCTAAATCACAAAGAAAATTTTCAAATTTGATTCTAACTACCACAACAGAAACCTTTCATAGCTAA 1926 0.3951 MYTRRLKRLESSVTSMDIKNSDKTRAAKVSGRRTKEITGKEDLLDKLRNVDLPEQEWVNKIPECPVFCPSEHEFEDPLVYLQKIAPEAQKYGMCKIVSPLNASIPAAVVLMKEIGNFKFETIVQPLGYSEMNKDKETIYSLRGRKYTYRDFETLANKASRGRFYSLGSPPSSYLEKLFWHEMEHGEMGTVEYGVNIDGSAFSCDPLDKLGKSKWNLKNFSRLRKSTLQFIDRKIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASRFEEVALDHVFHNKILSKHNGEAGAYETLAHKTTIFSPNVLLQHDVPVYKAVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAVSDWFPLGAEATRRYALLGKMPIIPFEELLCNEAMLIYKASNNLKGSSNKKLDLESDHATKLSFMQLMRCYDEALSRLRKSSIEYSSSSSNSLGTVVCSLCSRDCYVAFLLCNKCYSLPICIFHDETETRSCSCGRQCTFYKRDETLSLMDAATSFELEKDILLEVQRHSGANILSKTSFFTDQESIQDNKSNHCHEERIPSGTVSSVVERASTSKIRKEDTIELNLEDKKKLVLKFCRKREPPTDDEKGAQEKSKSQRKFSNLILTTTTETFHS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1394 641 ProSiteProfiles JmjN domain profile. 64 105 IPR003349 -
Acco08g1394 641 Pfam jmjN domain 65 97 IPR003349 -
Acco08g1394 641 MobiDBLite consensus disorder prediction 604 641 - -
Acco08g1394 641 MobiDBLite consensus disorder prediction 623 641 - -
Acco08g1394 641 SMART JmjN_1 63 104 IPR003349 -
Acco08g1394 641 MobiDBLite consensus disorder prediction 604 622 - -
Acco08g1394 641 Gene3D Cupin 64 431 - -
Acco08g1394 641 Pfam JmjC domain, hydroxylase 241 365 IPR003347 -
Acco08g1394 641 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 581 - -
Acco08g1394 641 SUPERFAMILY Clavaminate synthase-like 139 400 - -
Acco08g1394 641 ProSiteProfiles JmjC domain profile. 208 382 IPR003347 -
Acco08g1394 641 SMART cupin_9 208 382 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1394 Acco-ChrAcco08 16447001 16451158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1394 53 518 JUMONJI Transcription Factor Family AT2G34880 32.282 3.34e-59 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco08g1394 JmjC 2.6e-40 CL0029