Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1387 ATGATTTTCACGATTAGCAACGATATGAAGAACATATCCAAAGTGACTCTCTTTGATCTATATTCCATCGGTGATTCAACCGACTTCATTTCGCTTTCGTTTAGAATCATGGACGGAGTTCATGGTGGCATGGTGAGTCCCGCGGCGGCAAATGTGAATTCTCCGCCGCCATTCCTTAGCAAGACCTATGACATGGTCGATGACCCTTCCATAAACTCGGTGGTCTCATGGAGTGATAATAACAACAGCTTTGTTGTTTGGGATGTGCCCGAGTTCGCTAGGGACATCTTGCCCAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAATTGAATACTTACGGTTTTAGAAAGGTTGATCCAGATCGCTGGGAGTTCGCAAATGAAGGATTTTTAAGGGGTCAGAAGCAACTCCTGAAGAGTATCAGTAGGAGGAAAGCTACTCAAGTGAATGGCAATCAACAGCCATCTCCAGCACAGAGCAAACCTGTTGGGGCATTTATTGAGGTTGGAAAGTTTGGGCTTGATGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGACAACAGCAACAAGCAACTGATAACCAATTGCAAAGTGTTGGCCAACGTGTGCAGGTTATGGAGCAGCGTCAGCAACAGATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCATGGCACAGTTTGTACAGCAGCAGAGTGACAGCAACAGGCAGATTGCTGGAGGCAATAAAAAGAGGAGACTCCACAGGCAGGAAGAAGATACATTACCCTCTGATCATCTCTATAATGCTCTTGATGGACATGTTGTGAAGTATCAACCCTCGATGAATGAGGCTGCAAAAGCATTATTGCGCCAGCTATTGCAAATGAATGCTTCTTCAAGGAGGGAATCATCAATAAATAACCCTGATGCTTTTCTCATTGATGATATTCCTTCTGCCATTCCATTAGATAGTGGGAGTTCCTCTAGTGGGGCTTCGGGAGTGACTCTTTCTGAGGTTCCACCTGCTTCTGGCCCGTCTTATATGGCAGGGCAATCACAGTTGCCTGTTAATCGTGTTACCACCAACATATCTCAAATGCAATCTTCCTGTGCTGTGTTGACTGATCCTGTTAAAGTAGCTGAATTTCCGGGATTAAATTTGCATAATTGCCCAGAGAATGTTCTGGGTATTGGTGAAGTCCTAGGTGTGGAGACAGAGAGCAGTTTAGTGAATCCTGAACTCACTTTTGTGGGGCATGACACTGGGCATGCAGGGGACATAGACATGATGTCATCAGTTCTGGATGGGGCACAGTCTGTAGAAGTAGAGGCTGATGCCTTTTCACCTGATCCAGATGGAATTTCTAAGCTCCCAAGCATTAATGATGTTTTCTGGGAACAGTTTCTCACGGGAAGTCCGCTTACAGGCGATACAGATGAAATTAGTTCTTCTCCTCTTGGAGGTGGTCTGACCAAGGAAGGGGAATCTCCATCTAGAAAGGATAATGGACAGGAAAAGTTGGATGAGATAAAACATATTGATCATCTTGCTCAACAGATGGAACTTCTTGCTTCCAACAATTCCTAA 1617 0.4447 MIFTISNDMKNISKVTLFDLYSIGDSTDFISLSFRIMDGVHGGMVSPAAANVNSPPPFLSKTYDMVDDPSINSVVSWSDNNNSFVVWDVPEFARDILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKATQVNGNQQPSPAQSKPVGAFIEVGKFGLDEEVERLKRDKNVLMQELVRLRQQQQATDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFMAQFVQQQSDSNRQIAGGNKKRRLHRQEEDTLPSDHLYNALDGHVVKYQPSMNEAAKALLRQLLQMNASSRRESSINNPDAFLIDDIPSAIPLDSGSSSSGASGVTLSEVPPASGPSYMAGQSQLPVNRVTTNISQMQSSCAVLTDPVKVAEFPGLNLHNCPENVLGIGEVLGVETESSLVNPELTFVGHDTGHAGDIDMMSSVLDGAQSVEVEADAFSPDPDGISKLPSINDVFWEQFLTGSPLTGDTDEISSSPLGGGLTKEGESPSRKDNGQEKLDEIKHIDHLAQQMELLASNNS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1387 538 SMART hsfneu3 54 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco08g1387 538 MobiDBLite consensus disorder prediction 504 518 - -
Acco08g1387 538 Coils Coil 523 538 - -
Acco08g1387 538 MobiDBLite consensus disorder prediction 247 269 - -
Acco08g1387 538 FunFam Heat shock transcription factor 1 51 148 - -
Acco08g1387 538 Pfam HSF-type DNA-binding 58 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco08g1387 538 Coils Coil 174 201 - -
Acco08g1387 538 MobiDBLite consensus disorder prediction 333 360 - -
Acco08g1387 538 Gene3D - 50 148 IPR036388 -
Acco08g1387 538 SUPERFAMILY "Winged helix" DNA-binding domain 53 147 IPR036390 -
Acco08g1387 538 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 51 345 IPR027725 -
Acco08g1387 538 MobiDBLite consensus disorder prediction 484 518 - -
Acco08g1387 538 Coils Coil 292 312 - -
Acco08g1387 538 ProSitePatterns HSF-type DNA-binding domain signature. 97 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco08g1387 538 PRINTS Heat shock factor (HSF) domain signature 109 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco08g1387 538 PRINTS Heat shock factor (HSF) domain signature 58 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco08g1387 538 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1387 Acco-ChrAcco08 16374428 16380548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1387 52 535 HSF AT5G16820 53.722 2.44e-151 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco08g1387 HSF_DNA-bind 7.1e-33 CL0123