Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1305 ATGGCTGCGGTTGCTGAGATTTCCGTGGATGCAGCAGCAGCAGCTACGAACCAGTTGGACTCAAATTCCAAGTCGAAATCAGAATTCAATGTGCAAAAGCTCGTCGATATGTTCACTAAGTTGAATCCTTTGGCGAAAGAGTTTATCCCTTCAAGATATTCTCACCATGATCACTTCCATCAGGGCGATCATCAGCTCCCTCCGAACAATTTTCTGGTCGGAAATAATATGGCAGCTGACGGTCACCAAAATAATCGAAGGAGAAGAACTAATTATACCCAGGGGAGGAGAAGGTCAAATGGAAGAGTGCACAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTACTAATTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCATGGTGCAAGAGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGGTACTATCCAGTTAGGGTCCTTCCTTCCAAAACTGCCATCCTTCCTGTGAATCCCACGTTCCTCCCTAGGTCTGAGGATGAACGCGAAATGTGTAGCAGGACTGTCTACTGTACAAATATTGATAAGAAGATTTCTCAGGCTGAAGTGAAGAACTTCTTTGAAACTACTTGTGGTGGTGAGGTTACCCGCTTGAGGCTTTTAGGAGATCATGCTCATTCAACTCGAATTGCTTTTGTAGAATTTGCAATGGCTGAAAGTGCCATTATGGCACTAAATTGTAGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCGAAGACACCAGTGAGGCCAAGAATGCCCCATCCAACACCCCATTAA 903 0.4463 MAAVAEISVDAAAAATNQLDSNSKSKSEFNVQKLVDMFTKLNPLAKEFIPSRYSHHDHFHQGDHQLPPNNFLVGNNMAADGHQNNRRRRTNYTQGRRRSNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSILRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETTCGGEVTRLRLLGDHAHSTRIAFVEFAMAESAIMALNCSGMPLGSQPIRVSPSKTPVRPRMPHPTPH 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1305 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 37 293 - -
Acco08g1305 300 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Acco08g1305 300 MobiDBLite consensus disorder prediction 280 300 - -
Acco08g1305 300 Pfam Ataxin-2 C-terminal region 37 51 IPR009818 -
Acco08g1305 300 CDD RRM2_CID8_like 207 289 IPR034825 -
Acco08g1305 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Acco08g1305 300 CDD RRM1_CID8_like 112 191 IPR034823 -
Acco08g1305 300 SMART rrm1_1 212 284 IPR000504 GO:0003723
Acco08g1305 300 SMART rrm1_1 115 185 IPR000504 GO:0003723
Acco08g1305 300 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
Acco08g1305 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Acco08g1305 300 FunFam Polyadenylate-binding protein-interacting protein 10 205 284 - -
Acco08g1305 300 SUPERFAMILY RNA-binding domain, RBD 83 190 IPR035979 GO:0003676
Acco08g1305 300 Gene3D - 199 293 IPR012677 -
Acco08g1305 300 Gene3D - 74 190 IPR012677 -
Acco08g1305 300 MobiDBLite consensus disorder prediction 75 108 - -
Acco08g1305 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Acco08g1305 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1305 Acco-ChrAcco08 14582858 14588959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1305 111 269 Eukaryotic Initiation Factors Gene Family AT1G34140 25.309 4.43e-11 61.2