Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1263 ATGAAACTCATTTGCAATATACTCCACGTAATTCCTCTTATCAATGCAAGAGGCAGTCCCCTTCTATTGCCAAAAGTAATATCTCAAATATGCAAATACTGGATGAACGGAAATTGTGTATATGGCGATCGTTGTTGGAACTTGCATTCTTGGTTTCATGGCAAGCACCTCTCTGTGCTCACTAGGCTCAATCAACACAAGAAGATGGTCACTGGGATTACACTTCCCGTCAGATCGGACAAACTTTTTTCCAGTAGCACTGATGGGACACTTAGGATGTGGGACTGTCATACGGGTCAATGTGTTAGTGTAATGAATTTGGGTGATGAAGCAAGTTGTTTGATTAGTATGGGCCCTTGGGTTATTGCTGGTATTTGGAATGTTATTAAGGCATGGAACATTCAGACAGCTACTGAGGTCACTCTTGATGGACCAAAGGGCAATGTACTTTCCATGTTTGTTTGCAACGATACACTTTTTGCCGGAGCAATGGATGGTGTTATTTATGCATGGAGACCGAGTTCTGAAGCAAATTTCCCATTCAAGGCATTAGCAATGTTGAGTGGCCACAACAAAGCTGTTGTTTGTTTAACTGGTGGACGTGGGGACAAGTTGTACTTGGGTTCTATAGATCATAGCATCAAGGTTTGGGACCTCAACACATTACAATGTACAATGACGTTGAAAGGGCACACTGATGTTGTGACATCCCTTATTTGTTGGGACCAATACTTGTTATCAAGTTCACTGGACGGCACCGTAAAGGTTTGGGGTGCCACTGAGAAAGAAACTTTGGAAGTGGTATACACGCACAATGAAAAAAATGGTGTGGTTAGAATCAATGGTATGGTTGATGCACAAGGAAAACACACATTGTTCTGCTCGTGCAACAACCATTCAGTTGGACTATATGAAATGCCAACGTGA 927 0.4218 MKLICNILHVIPLINARGSPLLLPKVISQICKYWMNGNCVYGDRCWNLHSWFHGKHLSVLTRLNQHKKMVTGITLPVRSDKLFSSSTDGTLRMWDCHTGQCVSVMNLGDEASCLISMGPWVIAGIWNVIKAWNIQTATEVTLDGPKGNVLSMFVCNDTLFAGAMDGVIYAWRPSSEANFPFKALAMLSGHNKAVVCLTGGRGDKLYLGSIDHSIKVWDLNTLQCTMTLKGHTDVVTSLICWDQYLLSSSLDGTVKVWGATEKETLEVVYTHNEKNGVVRINGMVDAQGKHTLFCSCNNHSVGLYEMPT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1263 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 267 IPR001680 GO:0005515
Acco08g1263 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 227 IPR001680 GO:0005515
Acco08g1263 308 SMART WD40_4 135 172 IPR001680 GO:0005515
Acco08g1263 308 SMART WD40_4 56 95 IPR001680 GO:0005515
Acco08g1263 308 SMART WD40_4 221 258 IPR001680 GO:0005515
Acco08g1263 308 SMART WD40_4 180 218 IPR001680 GO:0005515
Acco08g1263 308 SUPERFAMILY WD40 repeat-like 44 306 IPR036322 GO:0005515
Acco08g1263 308 Gene3D - 39 113 IPR015943 GO:0005515
Acco08g1263 308 PANTHER - 29 308 IPR044715 -
Acco08g1263 308 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Acco08g1263 308 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Acco08g1263 308 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Acco08g1263 308 Pfam WD domain, G-beta repeat 184 218 IPR001680 GO:0005515
Acco08g1263 308 Pfam WD domain, G-beta repeat 223 257 IPR001680 GO:0005515
Acco08g1263 308 Pfam WD domain, G-beta repeat 62 95 IPR001680 GO:0005515
Acco08g1263 308 Pfam Zinc finger domain 31 49 - -
Acco08g1263 308 SUPERFAMILY CCCH zinc finger 27 50 IPR036855 GO:0046872
Acco08g1263 308 SMART c3hfinal6 25 51 IPR000571 GO:0046872
Acco08g1263 308 ProSitePatterns Trp-Asp (WD) repeats signature. 205 219 IPR019775 -
Acco08g1263 308 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Acco08g1263 308 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 95 - -
Acco08g1263 308 Gene3D - 114 308 IPR015943 GO:0005515
Acco08g1263 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 104 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1263 Acco-ChrAcco08 13881700 13883688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1263 116 303 Acyl Lipid Metabolism Gene Families AT3G18860 28.125 3.58e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco08g1263 WD40 0.00011 CL0186