LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g1250	ATGAGCAAGTCCTTGCTTTTAGGCTTTTACATCACAGTTTCCTGCATCGCTTTTGTCATTTCCAAGATTATCATCTCAGTCCTCCTCTACAAAAGATGGAAAAGAAAGCACATGATTCACGAAGAAGGCTATGCAGGTGGGAAGATGGTGATATTTAGGTCTTCAGTTCTGCAATCCCTCGAATCTGATACGATGTTGAAGAAGGCAATGAGCCTGAATAATATGGAGGTGATTGGGTGGGGAGGTTATGGGACGGTTTATAAACTGAAAATAGATGACTCAAAAGCTTTTGCAGTGAAAAGACTGAACAGAGGAACTGCAGATAAAGGATTTGAGAGAGAGCTGGAAGCAATGGCAGACATAAAACACCGCAATATTGTAACTCTTCATGGATATTATACTGCTCCACATTACAACCTCCTCATATATGAGTTGATGCCTAATGGAAGTTTGGATAATTTCCTCTGCAGAAGAGCAGAGCAGAAGAAAACTTTAAATTGGTCAGCAAGATACAGAATAGCTATAGGTGCTGCTAGAGGAATATCTTATCTTCACCATGATTGTATCCCTCACATAATCCACAGAGATATCAAGTCAAGCAATATATTACTGGACGAAAACATGGAGGCTCGAGTTTCTGATTTTGGATTAGCCACGTTGATGGAACCAGACAAAACCCATGTTTCCACAATTGTAGCTGGAACTTTTGGATACTTAGCTCCTGAATACTTTGATACAGGAAGAGCAACATTCAAGGGGGATGTCTACAGCTATGGAGTTGTACTACTGGAGCTTTTAACCGGGAGAAAACCCAGTGATGAAACATTTGCTGAAGAAGGAACGAAACTTGTCACATGGGTGAAGGCTGTTGTTCAGGAAAAGAAGGAGGAACTAGTTCTTGATGATAGGCTAGGGACCTGTCCAATGCAAGAAGTTAACAATGTGTTCAATATTGCCATGATGTGTCTTGAATCTGATCCCTTGAAGAGGCCAACAATGGAAGAAGTTGTCAACTTGCTTGAGCAGAAGAAGCCGGACAAACTTGCTACAGCTTCCTGA	1059	0.4127	MSKSLLLGFYITVSCIAFVISKIIISVLLYKRWKRKHMIHEEGYAGGKMVIFRSSVLQSLESDTMLKKAMSLNNMEVIGWGGYGTVYKLKIDDSKAFAVKRLNRGTADKGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDNFLCRRAEQKKTLNWSARYRIAIGAARGISYLHHDCIPHIIHRDIKSSNILLDENMEARVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATFKGDVYSYGVVLLELLTGRKPSDETFAEEGTKLVTWVKAVVQEKKEELVLDDRLGTCPMQEVNNVFNIAMMCLESDPLKRPTMEEVVNLLEQKKPDKLATAS	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g1250	352	Pfam	Protein kinase domain	74	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g1250	352	SUPERFAMILY	Protein kinase-like (PK-like)	72	342	IPR011009	-
	Acco08g1250	352	SMART	serkin_6	72	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g1250	352	ProSitePatterns	Protein kinases ATP-binding region signature.	78	100	IPR017441	GO:0005524
	Acco08g1250	352	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	146	351	-	-
	Acco08g1250	352	ProSiteProfiles	Protein kinase domain profile.	72	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g1250	352	FunFam	Receptor-like serine/threonine-protein kinase	43	145	-	-
	Acco08g1250	352	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	12	342	-	-
	Acco08g1250	352	Gene3D	Transferase(Phosphotransferase) domain 1	146	350	-	-
	Acco08g1250	352	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Acco08g1250	352	Gene3D	Phosphorylase Kinase; domain 1	50	145	-	-
	Acco08g1250	352	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	15	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g1250	Acco-ChrAcco08	13708118	13711194	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g1250	3	343	Receptor kinase-like Gene Family	AT2G35620	47.262	2.18e-101	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Acco08g1250		Pkinase	7.5e-50	CL0016