Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1234 ATGTCAGCCGCAACCTCTGGTTTGTGTCCAAGCTTGTTGTGGCACTCTAATCTCTCCCAACTTGCTGTAATCGCTAGTGTTGCTTTGTGGAAGTGGAGGAGGGATGATGTCAATCCGCACAAACAAACCCAGAAACCCCAAAACATGGATCCCGATTATCATGGCTTACCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACAAGAGCTCCAGAATCAACTGGGAAATCACAATCACAACATTCACGATGAACGCGCCGGCGTTTCCTGCTCAACCTTACCTGCAAAGAAGCGTAAGGAATCTCGGGATTCAATATTTCTTTCTGATTCGCCAGTTTCAGTCTCTGTCAACACTTATTCGTTACCGGCCAAGAAACGGGTATGGGCTCTTCTACCTGATATTGCTTCCGATATCGGTGTTTCTTCTATTGACCTCAATGTTGAATACCAACCATCAATTGAGGAAGAAATAAAATCAGTAAACGATGAACCCAGTAATTCCGGGATTTCACTTGTAGCAAATTCCCTCGATGTTGAAAATGAAAATGAAAATATTGAAGATGTTGATGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACCGATGGGGATCCATCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGAAATCCGCTTGTAAAAGGAATACCTGAAGGTGATTGGTTCTGTGAAAAATGCAGAGTTTCACCGTCTTCTCAAACTAAGAAAGATAATGAAAACAACATTTCTTGTTGCCTCTGTCCTACAAAGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCCCATATTGTGTGTGCACTTTTAGTCCCTGAGGTGTTTTTTAAGGACCCAGAGGGAAGAGAAGGGATTGATTGCTCAATGATTCCCAAGAAGAGGTGGTCTGAGAAGTGTTATATTTGTGAATCTTCAAGTGGCTGTGCCATTGTGTGTTCTGAGATTAAGTGTCCTTTGGCATTTCATGTTACTTGTGGGTTGAAAGAGGATCTTAGCATTGAGTATCGTGAAGGGAAGAAGAATGCGACCATCGTTGCTGGTTTCTGCAAAAGCCACACTGAGTTATGGAAAAAGCAACAGTTATCTGGGAAATACAGAATCGTAGCTGAAGAAAACAAGTAG 1173 0.4322 MSAATSGLCPSLLWHSNLSQLAVIASVALWKWRRDDVNPHKQTQKPQNMDPDYHGLPPLKRFRLIQQQQELQNQLGNHNHNIHDERAGVSCSTLPAKKRKESRDSIFLSDSPVSVSVNTYSLPAKKRVWALLPDIASDIGVSSIDLNVEYQPSIEEEIKSVNDEPSNSGISLVANSLDVENENENIEDVDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCRVSPSSQTKKDNENNISCCLCPTKEGAMKPTVDERWAHIVCALLVPEVFFKDPEGREGIDCSMIPKKRWSEKCYICESSSGCAIVCSEIKCPLAFHVTCGLKEDLSIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEENK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1234 390 SMART PHD_3 195 244 IPR001965 -
Acco08g1234 390 SMART PHD_3 315 370 IPR001965 -
Acco08g1234 390 Pfam PHD-finger 195 245 IPR019787 -
Acco08g1234 390 Pfam PHD-zinc-finger like domain 260 369 - -
Acco08g1234 390 ProSiteProfiles Zinc finger PHD-type profile. 193 246 IPR019787 -
Acco08g1234 390 ProSiteProfiles Extended PHD (ePHD) domain profile. 258 370 IPR034732 -
Acco08g1234 390 CDD ePHD 261 369 - -
Acco08g1234 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 249 IPR013083 -
Acco08g1234 390 CDD PHD_BRPF_JADE_like 195 243 - -
Acco08g1234 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 372 IPR013083 -
Acco08g1234 390 PANTHER PHD FINGER PROTEINS 83 370 - -
Acco08g1234 390 SUPERFAMILY FYVE/PHD zinc finger 182 249 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1234 94 388 C2H2 Transcription Factor Family AT3G14740 58.599 6.51e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco08g1234 zf-HC5HC2H_2 2.5e-29 CL0390