Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1216 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTGTGCTGTGCGGACGAGGCCGCGCTATGTCGTCGGTGCGACGAGAAGGTTCATGCAGCTAACAAGCTCGCTACCAAGCATCAGAGGGTTCCTCTTTCTACCTCTTCCTCTCACATGCCCATATGTGATATTTGTCAGGAAGCAGTTGGCTATTTTTTCTGTCTGGAGGATCGAGCCTTACTATGCAGAAAATGCGATGTGGCAATACACACAGCAAACTCCCATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTGGGTCTTGAAGCAACTGAGCCTGTTGTTCCATCGTCCTCTGTGAAGCCAGATTCTGGGGGGAAAGTGTCAGATACAGTATCTACTTCTGTCTCGAAGAAGGCTTCTTCAATGCCTCAGCCATCTGAATACAATGAATTGTTACCTACTCAAATTGGAGGAATTGAGGAGTTTCAACCAACCAAAGTGTCTTATGGTGGTGGTTTTACTAGCTGGCCGATTGATGAATATTTTGGTTTCAATGAATTCAGTCAGAATCTCAATTTCATGGACAATTCCAACGGACCATCCAAGGCAGAGAGCAGTAAGCTTGGGGATTCTGATTCTTCGGTTCTAAGATCTAGTGAAGAGGAAATGGATAATGAGGATCACTTGGGATGTGTTCCAGATTCATCTTGGACAGTTCCTCAGATCCCTTCCCCTCCTACGGCTTCGGGCTTATATTGGCCAAAAGATCCTCGTTATTCATCTGCTAATAATGTCATGTTTGTTCCTGACATATGCTCTCCTCACATCCATCAGCCTCTTCGTGCTCAGGGAAACAGTACATTATCAAAGCGTCAAAGGAGACAGTAA 885 0.4621 MKIQCNVCEAAEAEVLCCADEAALCRRCDEKVHAANKLATKHQRVPLSTSSSHMPICDICQEAVGYFFCLEDRALLCRKCDVAIHTANSHVSAHQRFLLTGVRVGLEATEPVVPSSSVKPDSGGKVSDTVSTSVSKKASSMPQPSEYNELLPTQIGGIEEFQPTKVSYGGGFTSWPIDEYFGFNEFSQNLNFMDNSNGPSKAESSKLGDSDSSVLRSSEEEMDNEDHLGCVPDSSWTVPQIPSPPTASGLYWPKDPRYSSANNVMFVPDICSPHIHQPLRAQGNSTLSKRQRRQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1216 294 CDD Bbox1_BBX-like 5 47 - -
Acco08g1216 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco08g1216 294 FunFam B-box zinc finger protein 22 1 93 - -
Acco08g1216 294 Gene3D Classic Zinc Finger 1 94 - -
Acco08g1216 294 MobiDBLite consensus disorder prediction 112 147 - -
Acco08g1216 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Acco08g1216 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Acco08g1216 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Acco08g1216 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 - -
Acco08g1216 294 Pfam B-box zinc finger 54 90 IPR000315 GO:0008270
Acco08g1216 294 MobiDBLite consensus disorder prediction 194 254 - -
Acco08g1216 294 MobiDBLite consensus disorder prediction 213 228 - -
Acco08g1216 294 MobiDBLite consensus disorder prediction 120 147 - -
Acco08g1216 294 CDD Bbox1_BBX-like 56 99 - -
Acco08g1216 294 MobiDBLite consensus disorder prediction 194 212 - -
Acco08g1216 294 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1216 Acco-ChrAcco08 13189086 13191465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1216 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 47.130 2.02e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco08g1216 zf-B_box 4.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1216 08 13189086 13191465 Acco08g1216 08 13189086 13191465 ECH