Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1212 ATGGATAGAATGCAAATCTCAAGAGTTGATAAATGGTTAGTGAAGGTGTTGATGGAAGATAAAAAGCTAGATAATTTCCAGAAAGCTTTCTTGGATAGGAAATGTGAATGGCAGGGTAGAGATTTGGTGCAGGAACTTGTTGGACTCAGAATCTTTGACAGATTGTTCATTCTCTTTGGTGAAAACGCTAAAGCAATAGAGCTGCAAATCATTTTGCTTGTTGATTCGTTGATGGTAGCAGCAATATTCCCTATGTCTGGTAAGGGTGTGATAGCTCGTCTCCACTATTACAGCAGAGCCTACACACAACGTTATCCCAACTATCAATTGAGGATAGCAAAAGGGAAGAGGCAAAGAGGAGCATCCATGGCTCTGCTCTGTGGTTCATCTTCGGTGACCTTCCTTTCATCTTCTGCTAAATCTTCCTATACTTCTTCCCACAGTGGGAATGCCAAAGCAGCATTTCTTGGCTTCCAATTGGCATCACCAAAGCCTTCTATACGCACCAATTTGCGCCTCAATTCTAGGGCAGGTTCTCAGGTGCGTTGCCAGGACCTCTCCATTGTCCCTAAAGATGAACGTTGGATGTTCGAGGAATCCGAAATCAATGGCCCGGACATTTGGAACAAAACTTGGTATCCGAAGGCAGCAGACCATGTGAACACAGATAAAACATGGTACATTGTTGATGCTACTGATAAAATTCTTGGAAGACTAGCATCAACTATTGCAATTTATATCCGAGGGAAAAATTTGGCAACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAAAATTGCTGTATCTGGAAAAAAGAGGACCCAAAAGCTTTATAGGAGGCATTCAGGACGTCCTGGTGGTATGAAAGTGGAGACATTTTCCCAACTGCAGGCGAGAATTCCAGAAAGAATTATTGAACATGCAGTTCGCGGCATGCTTCCAAAGGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTATAAGGGCCCCGATCATCCTCATCAGGCCCAAAAGCCCATAGAGTTACCATTAAGGGACAAAAGAATACAATTGCTGAGATAG 1089 0.4325 MDRMQISRVDKWLVKVLMEDKKLDNFQKAFLDRKCEWQGRDLVQELVGLRIFDRLFILFGENAKAIELQIILLVDSLMVAAIFPMSGKGVIARLHYYSRAYTQRYPNYQLRIAKGKRQRGASMALLCGSSSVTFLSSSAKSSYTSSHSGNAKAAFLGFQLASPKPSIRTNLRLNSRAGSQVRCQDLSIVPKDERWMFEESEINGPDIWNKTWYPKAADHVNTDKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMKVETFSQLQARIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQKPIELPLRDKRIQLLR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1212 362 NCBIfam 50S ribosomal protein L13 220 351 IPR005823 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 Gene3D Ribosomal protein L13 215 358 IPR036899 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 FunFam 50S ribosomal protein L13 209 353 - -
Acco08g1212 362 CDD Ribosomal_L13 226 339 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 Pfam Ribosomal protein L13 224 342 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 PANTHER RIBOSOMAL PROTEIN L13 212 357 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 SUPERFAMILY Ribosomal protein L13 220 353 IPR036899 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 Hamap 50S ribosomal protein L13 [rplM]. 226 352 IPR005822 GO:0003735|GO:0005840|GO:0006412
Acco08g1212 362 ProSitePatterns Ribosomal protein L13 signature. 316 338 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1212 Acco-ChrAcco08 13152017 13157696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1212 228 352 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 31.818 3.33e-06 45.8