Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1192 ATGGAATTAGCGATTCCAAGTTGCAAAGTGATCTATGTTTGGGCATTGGGATTAATGGCTCTGAATGTATTCACAGACTGTGGAGGATGCAACGCTCAGCAGATACCAGATGATGAAGTGAGAGCTCTAAAGGCAATATCATCCAAGATGAAGGATTTGAATTGGAAGGTGAGCTCTAGTTCTTGTATGGATGGAGGCTTCAAAAATCAGAGTTTTGTAGGAGACGACATCATTAAGAATGTTACCTGTAATTGCACTTTCTCCAGAGGAAAAATTTGCCATGTTACCCATATCGAGCTAAAGGGTCTCAATCTATCTGGAGTTATACCCAGTGAATTTGGTGATCTTACCCAACTACAAGTGCTTGATTTGACTCGCAACTATCTAAATGGCTCAATCCCAAAGAGCTTTGCTAAACTTTCTCTTGTTGTAATGTCCCTTCTGGCTAATCGACTCAGTGGTCCAATTCCAAATGAAATCGGCAATATTCCAACTTTGGAGGAGCTAGTGTTGGAAGATAATCATTTTGAAGGAACTCTTCCTTCTAGTCTCGGAAAATTGAAGCACTTACGCAGATTGCTTCTTTCTTCAAATAATTTCTCAGGGACGGTACCTGAAAGTTTTGGCAATCTAAAGAAACTGCAAGATTTTAGGTTAGATGGAAACACCATGTCAGGAAAATTACCCAGTTTTATTGGAAACTGGACCAATCTTGATAGATTGGATTTGCAGGGAACATCCATGGAAGGTCCAATTCCCCCAACCATAGCTTTGTTAACGAGTTTGACTCAGTTGAGAATATCTGATTTGAATGGGGAAACAACAACGAGATTTCCCGATCTAAAGAATTTGAAATCCTTGAAACAATTGGTGCTGAGAAATTGCTCAATTATTGGTTCCATTCCAAATTACATTGGTCAAATGGAAGAGTTAGTTACTCTAGATTTGAGCTTCAACAAGTTGACTGGTGGAATCCCAAATGAAATAGATGACTTGAAAAAACTAGATTACATGTTTTTGACTAACAATTCTTTGAGTGGAAAGATTCCAGGATGGATTCCAGTGAATAAAAATAACTTGGATTTATCTTACAACAACTTTTCAGATACTTCTGCTAAGATTTGTCAGCTTAAGGATGTAAACCTGGTTTCGAGCCTCTCATCTTCAGCAAAGACCCCAGTCACTTGCCTGAAAAAGGACCTTCCTTGTGGAGGAAAACCCAAGTATCATTCACTATTCATAAACTGTGGAGGATCAGAAATGGACTACGAGGGGAATAAGTATGAAAGTGACCTTGGTCAAGAGGGTATCTCATTTTTTAGTCCTGTTGATGACAGATGGGCTTATAGTAGCACAGGGACATACTTAGGAAACACTAAAGCTGATTACATTGCAAGAAACACATTTTCTCTCAACATGACTGGTCCAAGCTTCTACAAAACGGCTCGCCTTTCCCCGTTGTCCCTCAAGTATCACAGCTTCTGTTTGCTAAATGGAAATTACAATGTTAAGCTTTATTTTGCTGAGATTATGTTTTCTAATGACCAAACTTTCAGCAGCCTCGGCAGGCGCATATTTGATGTTTCAATTCAAGGGAGGAAAAATTTGAGTGATTTTAATATTGTGGATGAAGCTGGTGGTGTTGGTAAAGGAATTTTCAGGGATTTCAATGTTGATGTGAATGAAAACACTTTGGAGATCCATTTGTACTGGGCAGGGAAAGGAACTACAGCTATACCTAATAGAGGTGTATATGGACCTCTTATATCTGCTATTTCAGTAACCCCAAATTTCGAAATTCCTTCAGAAGGGCTTTCTGCTGGTACCATTGTTGGAATTGTGGTTGTATCATGCGTGTTCCTCGTATTGATATTGTTTTTCCTTCGAAAGATGGGGTTCTTAGGTGGGAAAGAGCAAAAAGACAAAGAACTATTAGATCTGAAAACGGGTTATTTCTCTTTAAGACAAATCAAAGCTGCCACTAATAACTTTTCTCCAGAAAATAAGATTGGTGAAGGAGGTTTCGGATCAGTGTACAAGGGTGTACTACCAGATGGTACTGTCATAGCTGTGAAGCAGCTCTCCTCCAAATCAAAGCAAGGAAATCGTGAATTTGTTAATGAAATTGGAATGATTTCTGCTTTGCAACACCCAAATCTTGTGAAGCTTTTTGGCTGCTGCATTGAAGGAAACCAGTTGTTATTGATATATGAGTACTTGGAGAATAACTGTCTTGCTCGCGCTCTTTTTGGTCATCAAGAAGAGAAATTAGACTTGGATTGGCCTACAAGAATGAAAATCTGTGTAGGTATAGCAAGAGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATTGTGCATCGGGATATCAAGGCAACAAATGTCTTACTTGATAAGGATTTGAATGCTAAGATCTCTGACTTTGGTTTGGCCAAACTTGATGAAGAAGAGAATACTCATATCAGCACAAGAATAGCAGGAACAATTGGTTATATGGCTCCTGAATATGCAATGCGAGGCTACTTAACTGACAAAGCAGATGTCTATAGCTTTGGAGTTGTTGCTTTAGAGATTGTTAGTGGAAAAAGCAATACAAATTACAGACCAAAGGAAGAGTTTGTTTATCTTCTTGACTGGGCCTACGTTCTTGAAGAGCAAGGAAACCTTCTTGAGCTAGTAGATCCAAGTCTTGGTTCGAGCTATTCCTCAAAAGAAGCTATGAGAATGTTGGAGTTAGCACTCTTATGTACTAATCCATCTCCAACTCTCAGACCGCCTATGTCATCTGTTGTTAGCATGCTTGAAGGAAAATCGCCGATCCAAGCGCCGGTAATCAAGCGCCGGGAGGGTGACCAAGATGCAAGATTCAAAGCCCTCGAGATTTTATCACAAGACAGCCGTAGTCAAACCTTTGTTTCTTCCACGATCTCACAAGAAAGCATGGAGCAAAGACTTCAATCAATGGGTCCATGGGCTGACTCCTCTGATACTCTTCCAAGTAAAGATTTCTCTTCATCTGATAAGCTTCTTAGGGATTCCAATGTATAA 3051 0.3953 MELAIPSCKVIYVWALGLMALNVFTDCGGCNAQQIPDDEVRALKAISSKMKDLNWKVSSSSCMDGGFKNQSFVGDDIIKNVTCNCTFSRGKICHVTHIELKGLNLSGVIPSEFGDLTQLQVLDLTRNYLNGSIPKSFAKLSLVVMSLLANRLSGPIPNEIGNIPTLEELVLEDNHFEGTLPSSLGKLKHLRRLLLSSNNFSGTVPESFGNLKKLQDFRLDGNTMSGKLPSFIGNWTNLDRLDLQGTSMEGPIPPTIALLTSLTQLRISDLNGETTTRFPDLKNLKSLKQLVLRNCSIIGSIPNYIGQMEELVTLDLSFNKLTGGIPNEIDDLKKLDYMFLTNNSLSGKIPGWIPVNKNNLDLSYNNFSDTSAKICQLKDVNLVSSLSSSAKTPVTCLKKDLPCGGKPKYHSLFINCGGSEMDYEGNKYESDLGQEGISFFSPVDDRWAYSSTGTYLGNTKADYIARNTFSLNMTGPSFYKTARLSPLSLKYHSFCLLNGNYNVKLYFAEIMFSNDQTFSSLGRRIFDVSIQGRKNLSDFNIVDEAGGVGKGIFRDFNVDVNENTLEIHLYWAGKGTTAIPNRGVYGPLISAISVTPNFEIPSEGLSAGTIVGIVVVSCVFLVLILFFLRKMGFLGGKEQKDKELLDLKTGYFSLRQIKAATNNFSPENKIGEGGFGSVYKGVLPDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLFGCCIEGNQLLLIYEYLENNCLARALFGHQEEKLDLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPSLGSSYSSKEAMRMLELALLCTNPSPTLRPPMSSVVSMLEGKSPIQAPVIKRREGDQDARFKALEILSQDSRSQTFVSSTISQESMEQRLQSMGPWADSSDTLPSKDFSSSDKLLRDSNV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1192 1016 Gene3D Transferase(Phosphotransferase) domain 1 740 956 - -
Acco08g1192 1016 SMART serkin_6 664 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco08g1192 1016 Pfam Malectin domain 412 592 IPR021720 -
Acco08g1192 1016 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Acco08g1192 1016 Gene3D Phosphorylase Kinase; domain 1 633 739 - -
Acco08g1192 1016 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Acco08g1192 1016 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 39 203 - -
Acco08g1192 1016 SUPERFAMILY RNI-like 97 373 - -
Acco08g1192 1016 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 25 967 - -
Acco08g1192 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 597 - -
Acco08g1192 1016 Gene3D - 410 597 - -
Acco08g1192 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
Acco08g1192 1016 Gene3D Ribonuclease Inhibitor 69 253 IPR032675 -
Acco08g1192 1016 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 739 - -
Acco08g1192 1016 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Acco08g1192 1016 Pfam Leucine rich repeat 164 222 IPR001611 GO:0005515
Acco08g1192 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 278 370 - -
Acco08g1192 1016 MobiDBLite consensus disorder prediction 978 1016 - -
Acco08g1192 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Acco08g1192 1016 Gene3D Ribonuclease Inhibitor 254 400 IPR032675 -
Acco08g1192 1016 SUPERFAMILY Protein kinase-like (PK-like) 649 936 IPR011009 -
Acco08g1192 1016 MobiDBLite consensus disorder prediction 978 1005 - -
Acco08g1192 1016 Pfam Protein tyrosine and serine/threonine kinase 667 929 IPR001245 GO:0004672|GO:0006468
Acco08g1192 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Acco08g1192 1016 CDD STKc_IRAK 670 937 - -
Acco08g1192 1016 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1192 Acco-ChrAcco08 12663298 12673284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1192 18 1005 Receptor kinase-like Gene Family AT1G53440 60.896 0.0 1208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco08g1192 PK_Tyr_Ser-Thr 4.1e-49 CL0016