Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1184 ATGAGGAGTCGTTCCATTATTGCCAGTGCTAGAGCTGTGAGAGACCTCCTCAATCGTAAAAGCCTGCCTTTTCCTTCGTCCTCCCTCCCACCCTCAGGCCCTCATTCTCACCGAGACTCTAACCAACCCAACACCTCAAAAACCTTTTTTGACAGACGGCGTCTGGGTGTACTATACTGCCATGGCCCAGCGTCAGGTCACTGCTTTTCCCTGCCCTCCTTCCACCATCTCCTTTATCTTCTTCCACGTTGCTCTCCCACTACCAATCGTTTGATCTCTCTCTCTCTCTGCGTTCCTCTCTCTATCAATAAACACGCCCTTGGCATTTTCGTTCCCCTCCTCATATTCTTCGGCGAGCACGATTTACACTACTCTCCCTCCTGCTACTATTCACTTGTGAATTCCCCCTCTGCTACGGCCGCCGCCGCCACCGCTTTCAACTCCTCAACGGAGTCTCTGAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGCGTGGGAGGTCCTATCAGAGGTGTTGTGAAATCCAGTGGTGGGGCCGCGTTGTCGTCATCCTCAGGGGTGACCCCGCCAAAGAAGGGGAGGGGTAGTGGGGTTCAGCCACCGAGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAAGTCTATAGTATGCACTCCAAATCACCCAGGGTCGTTGTGGCTGGTCAAGAGCAGAGGTTTTGCCAACAGTGTAGCCGGTCACCTCTGTTTCTTCCTCTCTTTTACGTTTCCCTCCCCCCTTCTTCCTCTTCTCTCTTATCCTCTGTCTCTCTCGGATCAGCTGGAGACAAATTTTCTCAATAA 864 0.5197 MRSRSIIASARAVRDLLNRKSLPFPSSSLPPSGPHSHRDSNQPNTSKTFFDRRRLGVLYCHGPASGHCFSLPSFHHLLYLLPRCSPTTNRLISLSLCVPLSINKHALGIFVPLLIFFGEHDLHYSPSCYYSLVNSPSATAAAATAFNSSTESLNGLKFGQKIYFEDVGVGGPIRGVVKSSGGAALSSSSGVTPPKKGRGSGVQPPRCQVEGCKVDLSDAKAYYSRHKVYSMHSKSPRVVVAGQEQRFCQQCSRSPLFLPLFYVSLPPSSSSLLSSVSLGSAGDKFSQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1184 287 Gene3D - 203 260 IPR036893 GO:0003677|GO:0005634
Acco08g1184 287 Pfam SBP domain 207 253 IPR004333 GO:0003677
Acco08g1184 287 SUPERFAMILY SBT domain 205 253 IPR036893 GO:0003677|GO:0005634
Acco08g1184 287 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 133 253 IPR044817 GO:0003677
Acco08g1184 287 MobiDBLite consensus disorder prediction 181 205 - -
Acco08g1184 287 MobiDBLite consensus disorder prediction 24 46 - -
Acco08g1184 287 ProSiteProfiles Zinc finger SBP-type profile. 204 281 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1184 Acco-ChrAcco08 12365811 12370290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1184 156 253 SBP-box Gene Family AT3G57920 50.000 1.42e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco08g1184 SBP 1.5e-16 No_clan