Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1166 ATGTCTCTGAGAAGCATTTTTCGTTCTCGGAAATTCTGTAGATCCTTGAAGGAGGTCAGGGTCGTCGAGGAAGATGAGCGGAAGGGGCGGATTGGCGGTGATTCCGATGACGGTGGGGACTCCACGGACTCTCCGCCTTACGGCCATTCATGGGCCACTATGCTGCCGGAGCTTCTAGGGGAGATCATTCGCCGTGTTGAGGCCACCGAGGACCAGTGGCCTAACCGCCAAAGCATCGTTGCTTGCGCCTGCGTGTGCAAGAGGTGGAGGGATACAACTAAGGAGATCCTGCGGTTCCCTTCGCGCGACAACGGAAGAATTACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCACGTGACTCACCCCACCAATGTATTATAAAGAGGGATAAGAAGACTTTGACATTTCACCTTTATCTTGCTCTTACTCCACCATCATTCACAGATAGAGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTTCTGGTATTGAATACGTACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACGAACTTCACAATCTATGATAGCCAGCCACCCCATTGCGGTGCAAGGCCTTCAAATGGCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATATGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCATGTATCATACAAGTTTAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTACTTAAGCTCCCAAGCCAATCATCAGGAGAAAGTTCAGATGGCAGATCTCTGGATGTTCACAAGACAAACCATACAGAACAAGCTGCCTCAGAATACTCAATCTTGAAAAACAAATCTCCGAGGTGGCACGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTGACTGTAGCATCGGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAGGAAACGGTTCTTCTTCAATTTGGGAAAGTAGGGGATGATACTTTCACTATGGACTACCGGAAGCCCCTATCTGCATTCCAGGCCTTTGCCATGTGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1149 0.4865 MSLRSIFRSRKFCRSLKEVRVVEEDERKGRIGGDSDDGGDSTDSPPYGHSWATMLPELLGEIIRRVEATEDQWPNRQSIVACACVCKRWRDTTKEILRFPSRDNGRITFPSCLKQPGPRDSPHQCIIKRDKKTLTFHLYLALTPPSFTDRGKFLLAAKRYRRGSGIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFASKQICPQVPAGNFEVGHVSYKFNLLKSRGPRRMVCLLKLPSQSSGESSDGRSLDVHKTNHTEQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAMCLTSFGTKLACE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1166 382 MobiDBLite consensus disorder prediction 24 47 - -
Acco08g1166 382 SUPERFAMILY Tubby C-terminal domain-like 105 382 IPR025659 -
Acco08g1166 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Acco08g1166 382 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Acco08g1166 382 Gene3D Tubby Protein; Chain A 108 382 IPR025659 -
Acco08g1166 382 Pfam Tub family 113 377 IPR000007 -
Acco08g1166 382 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Acco08g1166 382 Pfam F-box domain 56 97 IPR001810 GO:0005515
Acco08g1166 382 PANTHER TUBBY-RELATED 49 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1166 Acco-ChrAcco08 12014810 12025930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g1166 33 382 TUB Transcription Factor Family AT1G53320 72.576 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco08g1166 Tub 1.2e-99 CL0395